GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000746-TA|BGIBMGA000746-PA|undefined
         (437 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger) fa...    31   1.1  
At2g25840.3 68415.m03102 tRNA synthetase class I (W and Y) famil...    30   2.6  
At2g25840.2 68415.m03101 tRNA synthetase class I (W and Y) famil...    30   2.6  
At2g25840.1 68415.m03100 tRNA synthetase class I (W and Y) famil...    30   2.6  

>At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 691

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 192 VPGFSNEIEPGSSSEVVPEFTSEIIPGNTIQFALEVLPEAVPGISSEKLPGIENENVPYA 251
           V G SN   P   +  + E  S  IPGNT++  +   PE      S+    + N N+  A
Sbjct: 349 VGGTSNSTAPVERNLHLDETRSRSIPGNTLEIPMFAAPEVGNFARSQSSRNVTNGNLNSA 408

Query: 252 TGVA 255
           + V+
Sbjct: 409 SSVS 412


>At2g25840.3 68415.m03102 tRNA synthetase class I (W and Y) family
           protein contains Pfam profile: PF00579 tRNA synthetases
           class I (W and Y)
          Length = 396

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 278 EQKTLIVDEIKPFQIDGFRPLHFDLLHRPD 307
           + K LIVD+IK  + D F  L FD   RP+
Sbjct: 273 DSKDLIVDKIKRCKTDSFAGLEFDNAERPE 302


>At2g25840.2 68415.m03101 tRNA synthetase class I (W and Y) family
           protein contains Pfam profile: PF00579 tRNA synthetases
           class I (W and Y)
          Length = 412

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 278 EQKTLIVDEIKPFQIDGFRPLHFDLLHRPD 307
           + K LIVD+IK  + D F  L FD   RP+
Sbjct: 289 DSKDLIVDKIKRCKTDSFAGLEFDNAERPE 318


>At2g25840.1 68415.m03100 tRNA synthetase class I (W and Y) family
           protein contains Pfam profile: PF00579 tRNA synthetases
           class I (W and Y)
          Length = 408

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 278 EQKTLIVDEIKPFQIDGFRPLHFDLLHRPD 307
           + K LIVD+IK  + D F  L FD   RP+
Sbjct: 285 DSKDLIVDKIKRCKTDSFAGLEFDNAERPE 314


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.133    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,676,149
Number of Sequences: 28952
Number of extensions: 241447
Number of successful extensions: 339
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 4
length of query: 437
length of database: 12,070,560
effective HSP length: 83
effective length of query: 354
effective length of database: 9,667,544
effective search space: 3422310576
effective search space used: 3422310576
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)