Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000745-TA|BGIBMGA000745-PA|IPR006994|Basic
helix-loop-helix, Nulp1-type
         (271 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7774| Best HMM Match : No HMM Matches (HMM E-Value=.)               69   5e-12
SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)                   31   1.0  
SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_13681| Best HMM Match : Guanylate_cyc (HMM E-Value=2.8e-27)         29   5.4  
SB_12339| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_20495| Best HMM Match : DUF255 (HMM E-Value=3.9e-14)                28   9.4  
SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   9.4  

>SB_7774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 88  CHRTALELAKVMLNIDP-SDPCGVMLIVDVLALRAREHLWLVQAYEAWAVEKDASSLFNM 146
           CHRTALEL K +L++DP SDP   +L++D  AL + ++ +L++ YE W   ++ S L N 
Sbjct: 2   CHRTALELCKFLLSLDPDSDPLCALLMIDFFALTSDQYSFLLRLYEEWEHHRNLSQLPNF 61

Query: 147 QYSYPLALFHIA 158
            YS  +A FH++
Sbjct: 62  AYSVAMAKFHLS 73


>SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)
          Length = 1104

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 137 EKDASSLFNMQYSYPLALFHIAVKHKGLGFSLDRTANDLQELINFYAKMAYGK 189
           EKDA++   +Q     AL+  A+  K LG   D  A DL  L+   +K   GK
Sbjct: 770 EKDANTALGLQPDNVKALYRRALARKALG-KYDTAAKDLLSLVKIDSKNMSGK 821


>SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 653

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 195 VMDWLMTVLNELLDEYETQPHIQVRCRIFSNERMNIYRGYPLQVIRHLAIISPLWKFI 252
           V+DWL+T    ++D  +        C   + +R   Y+G P  + RH+ +   + KF+
Sbjct: 28  VIDWLVTNARLVMDRVDNNDSFVDEC---ARKRRIRYQGTPRNIYRHIILSGNVQKFL 82


>SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 216 IQVRCRIFSNERMNIYRGYPLQVIRHLAIISPLWKFIIDEAS 257
           +QV   IF  +R N Y G P    ++  + +PL++ I +  +
Sbjct: 357 LQVYVEIFDLQRKNDYSGLPNMEYQYFIVFTPLFRVITESVN 398


>SB_13681| Best HMM Match : Guanylate_cyc (HMM E-Value=2.8e-27)
          Length = 517

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 4   LERKEDITYFVFNHNDYYQKMQRMFLFVLHNRVGNMFL 41
           LER    +YF      Y+ K + + L+  HN +G MFL
Sbjct: 236 LERAMGGSYF---SRGYFNKTEELILYAQHNVIGKMFL 270


>SB_12339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 24 MQRMFLFVLHNRVGNMFLPI-DRASKDMHVDFMLESHVRLEYKYVENRPFHVAILKY 79
          MQ     V+ +   ++ LPI D     ++++ ++ S   +EY+Y+E R      ++Y
Sbjct: 1  MQTRMCIVISDFTSDVTLPIPDTLMFSLYIEVVISSIAYVEYRYIEYRHIEYRHIEY 57


>SB_20495| Best HMM Match : DUF255 (HMM E-Value=3.9e-14)
          Length = 130

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/38 (26%), Positives = 24/38 (63%)

Query: 75  AILKYIYMLTNKACHRTALELAKVMLNIDPSDPCGVML 112
           A LKY+ +  + +  R+++++++ + N+   +PC V L
Sbjct: 9   AYLKYLALFLSTSSMRSSVQISRFISNLTSKNPCPVRL 46


>SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 746

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 16  NHNDYYQKMQRMFL--FVLHNRVGNMFLPIDRASKDMHVD--FMLESHVRLE-YKYVENR 70
           N ND+  K  R     F ++N   N+F  +    + +     F   S + L  Y+YV   
Sbjct: 77  NENDWLDKYTRAVFTEFSIYNANSNLFCVVTLLIEQLPTGGIFKFPSILTLRLYRYVGGE 136

Query: 71  PFHVAILKYIYML 83
            F VA  + IY+L
Sbjct: 137 MFFVAACEIIYLL 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.328    0.140    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,683,870
Number of Sequences: 59808
Number of extensions: 330593
Number of successful extensions: 716
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 707
Number of HSP's gapped (non-prelim): 13
length of query: 271
length of database: 16,821,457
effective HSP length: 81
effective length of query: 190
effective length of database: 11,977,009
effective search space: 2275631710
effective search space used: 2275631710
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 59 (27.9 bits)