Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000745-TA|BGIBMGA000745-PA|IPR006994|Basic
helix-loop-helix, Nulp1-type
         (271 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   3.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.9  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   8.9  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 224 SNERMNIYRGYPLQVIRHLAII 245
           SN+  N+ R   + VIRH  I+
Sbjct: 84  SNKEYNMLRTTAINVIRHFGIV 105


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 196 MDWLMTVLNELLDEYE 211
           M+W+ T LN LLD  E
Sbjct: 812 MNWMPTHLNALLDMSE 827


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 246 SPLWKFIIDEASHFLNVFTNVRP 268
           SP W  +  EA + +N    V P
Sbjct: 133 SPEWDTVTPEAKNLINQMLTVNP 155


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.140    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,885
Number of Sequences: 429
Number of extensions: 3156
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 271
length of database: 140,377
effective HSP length: 57
effective length of query: 214
effective length of database: 115,924
effective search space: 24807736
effective search space used: 24807736
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 43 (21.4 bits)