Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000745-TA|BGIBMGA000745-PA|IPR006994|Basic
helix-loop-helix, Nulp1-type
         (271 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46900.1 68415.m05857 expressed protein contains Pfam profile...    78   7e-15
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    31   0.82 
At3g50380.1 68416.m05511 expressed protein                             28   7.7  
At3g28760.1 68416.m03590 expressed protein contains Pfam PF01959...    28   7.7  

>At2g46900.1 68415.m05857 expressed protein contains Pfam profile
           PF04910: Protein of unknown function, DUF654
          Length = 627

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 13/170 (7%)

Query: 14  VFNHNDYYQK----MQRMFLFVLHN-----RVGNMFLPIDRASKDMHVDFMLESHVRLEY 64
           V  HN Y+ +    M   F FV  N      +G     ++RA   M   F  + + RLE+
Sbjct: 256 VLIHNPYHIESLITMADYFKFVGENDMAADSIGKCLYGLERAWHPMFTPF--QGNCRLEF 313

Query: 65  KYVENRPFHVAILKYIYMLTNKACHRTALELAKVMLNIDPSDPCGVMLIVDVLALRAREH 124
            + EN+ F   +  ++  +  + CHR+ALE+ K++L++D S+P G +  VD  ALRA E+
Sbjct: 314 NHDENKLFFKTLFTHMRNMDRRGCHRSALEVCKLLLSLDTSNPVGALFCVDYFALRAEEY 373

Query: 125 LWLVQAYEAWAVEKDASSLFNMQYSYPLALFHIAVKHKGLGFSLDRTAND 174
            WL Q  E +    D S      +SY LA+  + ++      S + T  D
Sbjct: 374 AWLEQFSEEY--RNDNSLWLFPNFSYSLAIARVYLEKMEPTSSSEATPRD 421



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 1   MSILERKEDITYFVFNHNDYYQKMQRMF 28
           M  LE K+   YF + H+  Y++ QR F
Sbjct: 214 MEFLETKDGNNYFRYTHSSSYEQAQRAF 241


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 5/128 (3%)

Query: 93   LELAKVMLNIDPSDPC-GVMLIVDVLALRAREHLWLVQAYEAWAVEKDASSLFNMQYSYP 151
            LE A+   ++D  +P  G++LIV+ L L A E   +  A  A  V  + +  +       
Sbjct: 4364 LETARRAFSVDAMEPAEGILLIVESLTLEANESDSISAAQSALTVSNEETGTWEQAKKIV 4423

Query: 152  LALFHIAVKHKGLGFSLDRTANDLQELINFYAKMAYGKWREPPVMDWLMTVLNELLDEYE 211
            L          GL  S ++   + + +      + YG   EP  M+ L+   +  L  + 
Sbjct: 4424 LMFLERLSHPSGLKKS-NKQQRNTEMVARILPYLTYG---EPAAMEALIEHFSPYLQNWS 4479

Query: 212  TQPHIQVR 219
                +Q R
Sbjct: 4480 EFDQLQQR 4487


>At3g50380.1 68416.m05511 expressed protein
          Length = 3071

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 127  LVQAYEAWAVEKDASSLFNMQYSYPLALFHIAVKHKGLGFSLDRTANDLQEL---INFYA 183
            +++ +EA +   + S     +  YP+  F I V    LGF  D     ++E+   I  ++
Sbjct: 1182 VLEKFEADSSVTEISIPSQQENGYPVEAFSIDVAQFALGFVCDDEYGAIREIVLEITLHS 1241

Query: 184  KMAYGKWREPPVMD-WLMTVLNELLDEYETQPHI-QVRCRIFSNERMNIYRGYPLQ 237
             +      +  + +   ++VL+++L+  E   +I Q     FS+E  +   G PL+
Sbjct: 1242 SLDSAGGEQKFLCEVSRLSVLSKILESVERDINITQFSSPAFSSESSSFLPGTPLE 1297


>At3g28760.1 68416.m03590 expressed protein contains Pfam PF01959:
           predicted 3-dehydroquinate synthase
          Length = 422

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 54  FMLESHVRLEYKYVENRPFHV---AILKYIYMLTNKACHRTALELAKVMLNID 103
           F++ S   LE  Y+E+RPF V    +  Y+ +   K C+ + L   + ++ +D
Sbjct: 276 FLVHSEC-LESNYIESRPFRVNAGPVHAYVAVPGGKTCYLSELRTGREVIVVD 327


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.328    0.140    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,231,096
Number of Sequences: 28952
Number of extensions: 239719
Number of successful extensions: 626
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 624
Number of HSP's gapped (non-prelim): 5
length of query: 271
length of database: 12,070,560
effective HSP length: 80
effective length of query: 191
effective length of database: 9,754,400
effective search space: 1863090400
effective search space used: 1863090400
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 59 (27.9 bits)