Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000745-TA|BGIBMGA000745-PA|IPR006994|Basic
helix-loop-helix, Nulp1-type
(271 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 66 5e-12
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 28 1.6
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 28 1.6
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote... 27 3.8
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 26 5.0
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 5.0
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 26 5.0
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 26 6.6
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar... 25 8.7
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 66.1 bits (154), Expect = 5e-12
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 50 MHVDFMLESHV-RLEYKYVENRPFHVAILKYIYMLTNKACHRTALELAKVMLNIDPSDPC 108
+H F L + RL + NR + I +Y+ L ++ C RT E K +L D SDP
Sbjct: 328 LHPRFNLATGATRLPFAIPSNRRLFLCIWRYLQSLQSRGCWRTVFEFCKALLQFDMSDPY 387
Query: 109 GVMLIVDVLALRAREHLWLVQAYEAWAVEKDASSLFNMQYSYPLALFHI 157
+ +D+ ALR RE W++ S NM YS LA+F++
Sbjct: 388 AIGTCIDIYALRRREFAWIIDFANYLENSNKISDTPNMLYSSALAMFYV 436
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 110 VMLIVDV-LALRAREHLWLVQAYEAWAVEK 138
++ + DV + L A EH W + +E WA +K
Sbjct: 587 LLYVTDVSMPLLAEEHHWEAENFEVWAAQK 616
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 27.9 bits (59), Expect = 1.6
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 126 WLVQAYEAWAVEKDASSLFNMQYSYPLALFHIAVKHKGLGFSLDRTANDLQELINFYAKM 185
W V+ Y + K S S PL ++ K KG G+S D + EL+ Y
Sbjct: 426 WRVRLYIQSFIRKATSYEALFLESSPLNPYYKDYKFKGFGWSWDNDDEKVNELL--YLAP 483
Query: 186 AYGKWRE 192
+ WR+
Sbjct: 484 KFEAWRQ 490
>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
But1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 26.6 bits (56), Expect = 3.8
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 63 EYKYVENRPFHVAILKYIY 81
+Y YV+N P H++++ + Y
Sbjct: 116 DYGYVDNVPLHISVISHFY 134
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 26.2 bits (55), Expect = 5.0
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 151 PLALFHIAVKHKGLGFSLDRTANDLQELINFYAKMAYGKWRE--PPVMDWLMTVLNELLD 208
P+A FH+ + L + D LQEL +F +K +WR P++D + +
Sbjct: 27 PVA-FHVFTRKYDLNINRD----SLQELASFVSKKCGSQWRSQCEPLLDEIAKTWKRV-- 79
Query: 209 EYETQP 214
+ETQP
Sbjct: 80 -HETQP 84
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/77 (20%), Positives = 35/77 (45%)
Query: 27 MFLFVLHNRVGNMFLPIDRASKDMHVDFMLESHVRLEYKYVENRPFHVAILKYIYMLTNK 86
+++F+L R G + L + A + D H L+ + +R ++ + ++T K
Sbjct: 1256 VYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEK 1315
Query: 87 ACHRTALELAKVMLNID 103
+ L A+ L++D
Sbjct: 1316 SIEENILSRAQYKLDLD 1332
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 204 NELLDEYETQPHIQVRCRIFSNERMNIYRGYPLQVIRHLAIISPLWKFIIDE 255
N+ L +E P+++V + S + N+ G L H+ I+ P W I+E
Sbjct: 923 NQALINFEVDPNVRVL--LISLKAGNV--GLNLTCANHVIILDPFWNPYIEE 970
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 127 LVQAYEAWAVEKDASSLFNMQYSYPLALFHIAVKHKGLGFSLDRTANDL 175
+V E W +E + + PL L + HK G +LDR DL
Sbjct: 688 IVVQRETWNIELPNGEVQASRSQIPLILAYAISIHKAQGQTLDRVKVDL 736
>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 165 GFSLDRTANDLQELINFYAKMAYGKWREPPVMDWLMTVLNELLDEYETQP 214
G++++ T + QE + Y + W + TVLN+++D YE P
Sbjct: 356 GYAMESTCHTGQECL--YDVVKDKGWHLSITHHRMQTVLNDVIDAYEKLP 403
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.328 0.140 0.436
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,274,227
Number of Sequences: 5004
Number of extensions: 51382
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 133
Number of HSP's gapped (non-prelim): 11
length of query: 271
length of database: 2,362,478
effective HSP length: 72
effective length of query: 199
effective length of database: 2,002,190
effective search space: 398435810
effective search space used: 398435810
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 53 (25.4 bits)
- SilkBase 1999-2023 -