GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000745-TA|BGIBMGA000745-PA|IPR006994|Basic
helix-loop-helix, Nulp1-type
         (271 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0726 + 19758916-19759098,19759774-19760318,19760581-197614...    77   1e-14
04_04_0237 + 23831949-23832354,23833970-23835166,23835274-238354...    29   3.0  
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085...    29   4.0  

>09_04_0726 +
           19758916-19759098,19759774-19760318,19760581-19761492,
           19762067-19762328
          Length = 633

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 33/102 (32%), Positives = 59/102 (57%)

Query: 56  LESHVRLEYKYVENRPFHVAILKYIYMLTNKACHRTALELAKVMLNIDPSDPCGVMLIVD 115
           L S+ +L+Y +  N+PF  A+  ++  L  + CHR+ALE+ K +L++D  DP G +  +D
Sbjct: 321 LHSNCQLKYSHDTNKPFFTALFSHMKNLDRRGCHRSALEVCKFLLSLDSDDPKGALFCID 380

Query: 116 VLALRAREHLWLVQAYEAWAVEKDASSLFNMQYSYPLALFHI 157
             ALR++++ WL Q  E +  +       N  +S  +A F++
Sbjct: 381 YFALRSQQYKWLEQFAEEYQCDNSLWLFPNFSFSLAIARFYV 422


>04_04_0237 +
           23831949-23832354,23833970-23835166,23835274-23835453,
           23835537-23835823,23835912-23836029,23836354-23836483,
           23836693-23836861,23836926-23836991,23837466-23837738,
           23838131-23838349
          Length = 1014

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/82 (21%), Positives = 36/82 (43%)

Query: 57  ESHVRLEYKYVENRPFHVAILKYIYMLTNKACHRTALELAKVMLNIDPSDPCGVMLIVDV 116
           +S +RL YKY  N      ++  +Y+L +    R    +      +D  D  G ++I  +
Sbjct: 453 QSDIRLAYKYFCNFTVISTVIMALYVLVHIFLSRPGPLMGLEFKGLDLPDTFGELIISGI 512

Query: 117 LALRAREHLWLVQAYEAWAVEK 138
           L L+    L ++  +    V++
Sbjct: 513 LVLQLERLLSMISRFVEVRVQR 534


>01_05_0495 +
           22705697-22705765,22705903-22706025,22708429-22708586,
           22709162-22709206,22709367-22709445,22709522-22709595,
           22709703-22709809,22711116-22711301,22711882-22711920,
           22712020-22712086,22712207-22712281,22713113-22713347,
           22713425-22713755,22714530-22714710,22714810-22714950,
           22715041-22715302,22715503-22715892,22717179-22717735,
           22718421-22718557,22718672-22718853,22718959-22719339,
           22719420-22719545,22719635-22719700,22720056-22721839,
           22721914-22722193,22722386-22722616,22723067-22723588,
           22723683-22723815,22723937-22724193
          Length = 2405

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 189 KWREPPVMDWLMTVLNELLDEYETQPHIQVRC-RIFSN--ERMNIYRGYPLQVIRHLAII 245
           +WRE    D  ++   E +   +T P I + C +IFS   +R+N+     L+ I  L ++
Sbjct: 62  EWRELNTADDFISFYEETIHLVQTLPQIVLHCEKIFSGLLKRINMKARLSLEPI--LMLV 119

Query: 246 SPLWKFIIDEASHFLNVFTNVRPKLL 271
           + L + I+++   FL    N    LL
Sbjct: 120 AALSRDILEDFLPFLGRHANAILALL 145


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.328    0.140    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,434,131
Number of Sequences: 37544
Number of extensions: 277750
Number of successful extensions: 649
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 5
length of query: 271
length of database: 14,793,348
effective HSP length: 81
effective length of query: 190
effective length of database: 11,752,284
effective search space: 2232933960
effective search space used: 2232933960
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 59 (27.9 bits)