GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000745-TA|BGIBMGA000745-PA|IPR006994|Basic
helix-loop-helix, Nulp1-type
         (271 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81098-1|CAB03183.1|  581|Caenorhabditis elegans Hypothetical pr...    68   8e-12
AF047657-5|AAK18949.1|  335|Caenorhabditis elegans Serpentine re...    31   0.87 
AL132943-4|CAB81975.1|  690|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z71185-2|CAA94904.2|  522|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z32683-15|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p...    28   6.2  
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>Z81098-1|CAB03183.1|  581|Caenorhabditis elegans Hypothetical
           protein K07A12.1 protein.
          Length = 581

 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 1/99 (1%)

Query: 61  RLEYKYVENRPFHVAILKYIYMLTNKACHRTALELAKVMLNIDP-SDPCGVMLIVDVLAL 119
           R++Y   ENR F++ + +++    +K C  TA   AK++  +DP  DP  ++ ++D+ AL
Sbjct: 217 RMDYLDYENRAFYLLLHRHMLNAAHKRCWETAWNTAKMIFKLDPVKDPLAIISLIDIFAL 276

Query: 120 RAREHLWLVQAYEAWAVEKDASSLFNMQYSYPLALFHIA 158
           +A+++ W++  +EA    K    L N  YS  LA F  A
Sbjct: 277 KAKQYQWIINTFEAAKKFKKLHLLPNWPYSVALARFFTA 315


>AF047657-5|AAK18949.1|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein241 protein.
          Length = 335

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/41 (34%), Positives = 26/41 (63%)

Query: 2   SILERKEDITYFVFNHNDYYQKMQRMFLFVLHNRVGNMFLP 42
           S+L   E+  Y +F  N +++K+++ FLF ++  V  +FLP
Sbjct: 114 SVLAIYENRFYTLFAQNSWWKKVRKPFLFSIYTLVPLIFLP 154


>AL132943-4|CAB81975.1|  690|Caenorhabditis elegans Hypothetical
           protein Y116F11B.7 protein.
          Length = 690

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 175 LQELINFYAKMAYGKWREPPVMDWLMT---VLNELLDEYETQPHIQV 218
           LQ+L NFY        REP    WL+    V+NE  DEY +  HI +
Sbjct: 106 LQDLFNFYTNPVVFAVREPE--SWLVVIRWVMNEFADEYLSCFHIDL 150


>Z71185-2|CAA94904.2|  522|Caenorhabditis elegans Hypothetical
           protein C35A5.2 protein.
          Length = 522

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/54 (24%), Positives = 29/54 (53%)

Query: 204 NELLDEYETQPHIQVRCRIFSNERMNIYRGYPLQVIRHLAIISPLWKFIIDEAS 257
           ++++ E +    I     IFS +  ++Y+   +QVI+    ++ +WK+  D+ S
Sbjct: 284 DKIISERQQNILISFGSMIFSKDMPDVYKNTLVQVIKSFPNVTFIWKYEEDDVS 337


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 148  YSYPLALFHIAVKHKGLGFSLDRTANDLQELINFYAK 184
            YS+ L +F   +   G+ F L   +NDL+EL +FYA+
Sbjct: 7618 YSF-LQIFPKDISLYGIEFDLKYPSNDLRELAHFYAE 7653


>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical
           protein C35C5.6 protein.
          Length = 1224

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 121 AREHLWLVQAYEAWA 135
           A++HLWL  AY+ WA
Sbjct: 254 AQDHLWLAAAYDGWA 268


>Z32683-15|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 46  ASKDMHVDFMLESHVRLEYKYVENRPFHVAILKYIYMLTNKACHRTALELAKVMLNIDPS 105
           A K++H   ++   +R     V   PF++ I  Y   +T  +C R  L  A++   I P+
Sbjct: 559 AIKELHSFDIVHLDIRPSSFSVNQHPFNIKITDYSRCMTRNSCLRIYLAPARLRTYIVPT 618


>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 46  ASKDMHVDFMLESHVRLEYKYVENRPFHVAILKYIYMLTNKACHRTALELAKVMLNIDPS 105
           A K++H   ++   +R     V   PF++ I  Y   +T  +C R  L  A++   I P+
Sbjct: 559 AIKELHSFDIVHLDIRPSSFSVNQHPFNIKITDYSRCMTRNSCLRIYLAPARLRTYIVPT 618


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.328    0.140    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,658,585
Number of Sequences: 27539
Number of extensions: 264111
Number of successful extensions: 740
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 730
Number of HSP's gapped (non-prelim): 10
length of query: 271
length of database: 12,573,161
effective HSP length: 80
effective length of query: 191
effective length of database: 10,370,041
effective search space: 1980677831
effective search space used: 1980677831
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 59 (27.9 bits)