Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000744-TA|BGIBMGA000744-PA|undefined
         (228 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   4.5  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   6.0  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   7.9  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   7.9  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 175 KYLSAANEYRRLFGPD 190
           K+L A  EY R FG D
Sbjct: 161 KFLRAIEEYGRFFGLD 176


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/27 (40%), Positives = 12/27 (44%)

Query: 188 GPDEDERRYQPGHGAKLRRSVIVPFTE 214
           GP  D R  Q   G K +RS     TE
Sbjct: 27  GPQSDSRNQQLRTGEKRKRSTSSQSTE 53


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 87  TSFDNPPSTSSDNQPATSSGNQP 109
           +S  + P+T S  +PA +S N P
Sbjct: 246 SSRSHQPATKSKPRPAPASRNAP 268


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 92  PPSTSSDNQPATSSGN 107
           PP+T+S   PA+ + N
Sbjct: 35  PPATTSSGSPASVASN 50


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.129    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,114
Number of Sequences: 317
Number of extensions: 1280
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 228
length of database: 114,650
effective HSP length: 55
effective length of query: 173
effective length of database: 97,215
effective search space: 16818195
effective search space used: 16818195
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 42 (21.0 bits)