Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000744-TA|BGIBMGA000744-PA|undefined
         (228 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    27   3.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   4.0  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.3  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    25   7.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.2  

>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 85  PSTSFDNPPSTSSDNQPATSSGN 107
           P+++F  P +++ DN+P  S GN
Sbjct: 315 PNSAFTKPATSTGDNKPTFSFGN 337


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/107 (17%), Positives = 37/107 (34%)

Query: 3   NGANSAKIKKSTMSNRNMRKLCGGNTLXXXXXXXXXXXFQPKCVQNSVKSKYEGLEISDH 62
           N   SA    S++S+         ++L                  +S  S    L  S+ 
Sbjct: 201 NSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNS 260

Query: 63  XXXXXXXXXXXXDAAVHEEIVQPSTSFDNPPSTSSDNQPATSSGNQP 109
                        A  +   + PS++  + P +S+++  ATS+ + P
Sbjct: 261 TTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTP 307


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)

Query: 86  STSFDNPPSTSSDNQPATSSGNQPSS 111
           S+S  +  STS D+QP+TSS + PSS
Sbjct: 56  SSSSSSSISTSHDSQPSTSS-SSPSS 80



 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 86  STSFDNPPSTSSDNQPATSSGN 107
           STS D+ PSTSS +  +TS+ +
Sbjct: 64  STSHDSQPSTSSSSPSSTSTSS 85



 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 84  QPSTSFDNPPSTSSDNQPATS 104
           QPSTS  +P STS+ +   TS
Sbjct: 70  QPSTSSSSPSSTSTSSSSGTS 90


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 180 ANEYRRLFGPDEDERRYQPGHGAKLRRSV 208
           +N YR  + P   +R + PG+  K R +V
Sbjct: 221 SNRYRNSYRPSRPQREHSPGNYRKERYNV 249


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/47 (27%), Positives = 19/47 (40%)

Query: 82  IVQPSTSFDNPPSTSSDNQPATSSGNQPSSXXXXXXXXXXXXXXXXS 128
           I   S+S  +P STSS    ++SS + P+S                S
Sbjct: 273 ISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSS 319


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.129    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 841,799
Number of Sequences: 5004
Number of extensions: 26092
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 8
length of query: 228
length of database: 2,362,478
effective HSP length: 70
effective length of query: 158
effective length of database: 2,012,198
effective search space: 317927284
effective search space used: 317927284
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)