GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000744-TA|BGIBMGA000744-PA|undefined
         (228 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532...    30   1.8  
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892...    29   2.4  
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534...    29   4.1  
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999...    27   9.5  

>11_01_0657 +
           5322295-5323367,5323436-5323555,5323743-5323791,
           5323968-5324084,5324200-5324268,5324394-5324488,
           5325183-5325521,5327043-5327084,5327814-5327907,
           5328121-5328190,5328719-5329677
          Length = 1008

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 2/29 (6%)

Query: 85  PSTSFDNP-PSTSSDN-QPATSSGNQPSS 111
           PSTSF +P P+TS++N  PA  S NQ SS
Sbjct: 809 PSTSFPSPMPTTSNNNMMPAPQSTNQLSS 837


>01_06_0565 +
           30287253-30287502,30287522-30289010,30289133-30289277,
           30289679-30289729
          Length = 644

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 90  DNPPSTSSDNQPATSSGNQPSS 111
           D PPS SSD  P T  G  PS+
Sbjct: 336 DVPPSPSSDTSPTTPGGGSPST 357



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 85  PSTSFDNPPSTSSDNQPAT-SSGNQP 109
           PST  + PPS SSD  P T   GN P
Sbjct: 433 PSTPCNAPPSPSSDTSPTTPGGGNYP 458



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/25 (52%), Positives = 14/25 (56%)

Query: 87  TSFDNPPSTSSDNQPATSSGNQPSS 111
           T  D PPS SSD  P+T  G   SS
Sbjct: 126 TPSDTPPSPSSDTSPSTPGGGCSSS 150



 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/22 (54%), Positives = 12/22 (54%)

Query: 85  PSTSFDNPPSTSSDNQPATSSG 106
           PST  D PPS SS   P T  G
Sbjct: 355 PSTPCDTPPSPSSGTSPTTPGG 376


>11_01_0658 +
           5342508-5343602,5343697-5343764,5343994-5344042,
           5344217-5344333,5344438-5344506,5344631-5344725,
           5345580-5345658,5346499-5346563,5347368-5347461,
           5347675-5347744,5348363-5349357
          Length = 931

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 2/29 (6%)

Query: 85  PSTSFDNP-PSTSSDN-QPATSSGNQPSS 111
           PSTSF +P P+TS++N  PA  + NQ SS
Sbjct: 721 PSTSFPSPVPTTSNNNMMPAPQNTNQLSS 749


>12_02_0800 +
           23299674-23299678,23299714-23299791,23299876-23299920,
           23300052-23300415,23300493-23300574,23300793-23300873,
           23300974-23302106,23302202-23302350,23302426-23302516,
           23303628-23305940
          Length = 1446

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 86  STSFDNPPSTSSDNQPATSSGNQPSS 111
           S S D+P +  S ++P+T+SG  PS+
Sbjct: 97  SESLDSPNAWGSSSRPSTASGTLPSN 122


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.129    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,366,519
Number of Sequences: 37544
Number of extensions: 165154
Number of successful extensions: 308
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 17
length of query: 228
length of database: 14,793,348
effective HSP length: 80
effective length of query: 148
effective length of database: 11,789,828
effective search space: 1744894544
effective search space used: 1744894544
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)