GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000744-TA|BGIBMGA000744-PA|undefined
         (228 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20704| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_44410| Best HMM Match : RCSD (HMM E-Value=7.2)                      29   4.2  
SB_6168| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  

>SB_20704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/65 (27%), Positives = 27/65 (41%)

Query: 85  PSTSFDNPPSTSSDNQPATSSGNQPSSXXXXXXXXXXXXXXXXSGQGVEFKPGMDEIDRS 144
           PS  F+N P T+ ++    SS ++PS                 S   VE    +  IDR 
Sbjct: 33  PSDFFENQPETTQESDRKQSSNSKPSEDLPEGFFDDPKLDAKVSEALVEEDDEVARIDRQ 92

Query: 145 VLEVN 149
           + E+N
Sbjct: 93  LTELN 97


>SB_44410| Best HMM Match : RCSD (HMM E-Value=7.2)
          Length = 117

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 78  VHEEIVQPSTS-FDNPPSTSSDNQPATSSGN 107
           V      PS S   NPPS SSD++P+T + N
Sbjct: 16  VDRSSASPSNSTVSNPPSLSSDSEPSTPATN 46


>SB_6168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 46  VQNSVKSKYEGLEISDHXXXXXXXXXXXXDAAVHEEIVQPSTSFDNPPSTSSDNQPA-TS 104
           ++ SV  +  G   +              +AA     V  S+S ++P   ++DNQP  +S
Sbjct: 147 IEQSVLDQISGFLKNSAASVSTMVTTTSNEAAT--STVSTSSSTEHPVEETTDNQPVESS 204

Query: 105 SGNQPS 110
           S N PS
Sbjct: 205 SDNYPS 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.129    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,172,811
Number of Sequences: 59808
Number of extensions: 197616
Number of successful extensions: 394
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 5
length of query: 228
length of database: 16,821,457
effective HSP length: 80
effective length of query: 148
effective length of database: 12,036,817
effective search space: 1781448916
effective search space used: 1781448916
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)