GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000744-TA|BGIBMGA000744-PA|undefined
         (228 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical pr...    33   0.22 
Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical pr...    33   0.22 
AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha ki...    33   0.22 
AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic tr...    33   0.22 

>Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical
           protein F46C3.1 protein.
          Length = 1077

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 81  EIVQPSTSFDNPPSTSSDNQPATSSGNQPSSXXXXXXXXXXXXXXXXSGQGVEFKPGMDE 140
           E+ + S +F      S   + ++SS   PSS                SG G+EF  G D+
Sbjct: 773 ELKEESVAFSESDEESDTTEDSSSSDESPSSSSGSSIDDEPKKYNSSSG-GIEFVDGSDD 831

Query: 141 IDRSVLE 147
           +D   ++
Sbjct: 832 VDNEAVK 838


>Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical
           protein F46C3.1 protein.
          Length = 1077

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 81  EIVQPSTSFDNPPSTSSDNQPATSSGNQPSSXXXXXXXXXXXXXXXXSGQGVEFKPGMDE 140
           E+ + S +F      S   + ++SS   PSS                SG G+EF  G D+
Sbjct: 773 ELKEESVAFSESDEESDTTEDSSSSDESPSSSSGSSIDDEPKKYNSSSG-GIEFVDGSDD 831

Query: 141 IDRSVLE 147
           +D   ++
Sbjct: 832 VDNEAVK 838


>AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha
           kinase protein.
          Length = 1077

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 81  EIVQPSTSFDNPPSTSSDNQPATSSGNQPSSXXXXXXXXXXXXXXXXSGQGVEFKPGMDE 140
           E+ + S +F      S   + ++SS   PSS                SG G+EF  G D+
Sbjct: 773 ELKEESVAFSESDEESDTTEDSSSSDESPSSSSGSSIDDEPKKYNSSSG-GIEFVDGSDD 831

Query: 141 IDRSVLE 147
           +D   ++
Sbjct: 832 VDNEAVK 838


>AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic
           translation initiationfactor 2 alpha kinase PEK protein.
          Length = 1077

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 81  EIVQPSTSFDNPPSTSSDNQPATSSGNQPSSXXXXXXXXXXXXXXXXSGQGVEFKPGMDE 140
           E+ + S +F      S   + ++SS   PSS                SG G+EF  G D+
Sbjct: 773 ELKEESVAFSESDEESDTTEDSSSSDESPSSSSGSSIDDEPKKYNSSSG-GIEFVDGSDD 831

Query: 141 IDRSVLE 147
           +D   ++
Sbjct: 832 VDNEAVK 838


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.129    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,637,762
Number of Sequences: 27539
Number of extensions: 147487
Number of successful extensions: 407
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 4
length of query: 228
length of database: 12,573,161
effective HSP length: 79
effective length of query: 149
effective length of database: 10,397,580
effective search space: 1549239420
effective search space used: 1549239420
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)