GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000744-TA|BGIBMGA000744-PA|undefined
         (228 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15980.1 68417.m02426 pectinesterase family protein contains ...    30   1.5  
At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing pro...    29   3.4  
At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing pro...    29   3.4  
At1g30750.1 68414.m03758 expressed protein                             28   6.0  

>At4g15980.1 68417.m02426 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 701

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 2/32 (6%)

Query: 80  EEIVQPSTSFDNPPSTSSDNQP--ATSSGNQP 109
           +++ Q STS +N P  SS+N P  +TSS N+P
Sbjct: 309 DKLPQKSTSSENQPLDSSENPPQKSTSSENRP 340


>At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing
           protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
           zinc finger-containing protein ZiGA4 GI:10441354 from
           [Arabidopsis thaliana]; contains InterPro accession
           IPR001164: Human Rev interacting-like protein (hRIP)
          Length = 648

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/25 (56%), Positives = 17/25 (68%)

Query: 80  EEIVQPSTSFDNPPSTSSDNQPATS 104
           EEI+QPSTS   PP  S+ +Q A S
Sbjct: 424 EEILQPSTSMQLPPYPSTVDQHALS 448


>At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing
           protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
           zinc finger-containing protein ZiGA4 GI:10441354 from
           [Arabidopsis thaliana]; contains InterPro accession
           IPR001164: Human Rev interacting-like protein (hRIP)
          Length = 649

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/25 (56%), Positives = 17/25 (68%)

Query: 80  EEIVQPSTSFDNPPSTSSDNQPATS 104
           EEI+QPSTS   PP  S+ +Q A S
Sbjct: 424 EEILQPSTSMQLPPYPSTVDQHALS 448


>At1g30750.1 68414.m03758 expressed protein
          Length = 212

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 84  QPSTSFDNPPSTSSDNQPATSSGNQPSS 111
           QP T F N PS++  NQP +SS +  SS
Sbjct: 135 QPLTGF-NQPSSTGFNQPISSSSSSSSS 161


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.129    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,400,217
Number of Sequences: 28952
Number of extensions: 137559
Number of successful extensions: 258
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 8
length of query: 228
length of database: 12,070,560
effective HSP length: 79
effective length of query: 149
effective length of database: 9,783,352
effective search space: 1457719448
effective search space used: 1457719448
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)