Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000742-TA|BGIBMGA000742-PA|IPR003877|SPla/RYanodine
receptor SPRY, IPR001870|B302, (SPRY)-like
         (546 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    28   0.19 
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          26   0.77 
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           26   0.77 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   9.5  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   9.5  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 339 GYGIGDDLYSLSYDGCRKLIWYKAK 363
           GYG+G +LY +  DG R +I + ++
Sbjct: 609 GYGLGAELYQIQEDGSRGVIAFASR 633


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 9   KTDEREMYSPTAGPASASMSLSPGDARLRAMKALDPSIVDQLV 51
           K    ++ +P + PA  + SLSP      A  A D  IVD+L+
Sbjct: 145 KEQMNKVSTPRSSPAETASSLSPQSVASTASSA-DHQIVDRLL 186


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 9   KTDEREMYSPTAGPASASMSLSPGDARLRAMKALDPSIVDQLV 51
           K    ++ +P + PA  + SLSP      A  A D  IVD+L+
Sbjct: 136 KEQMNKVSTPRSSPAETASSLSPQSVASTASSA-DHQIVDRLL 177


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query: 364  PASVQDLPEWQP 375
            P S  + PEWQP
Sbjct: 1360 PGSTTNYPEWQP 1371


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 485 CYDAVADCTLEPCFHNDT 502
           C++ + DC + PC +  T
Sbjct: 65  CHENINDCKVNPCENGGT 82


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.137    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,899
Number of Sequences: 317
Number of extensions: 5692
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 5
length of query: 546
length of database: 114,650
effective HSP length: 60
effective length of query: 486
effective length of database: 95,630
effective search space: 46476180
effective search space used: 46476180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)