Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000742-TA|BGIBMGA000742-PA|IPR003877|SPla/RYanodine
receptor SPRY, IPR001870|B302, (SPRY)-like
(546 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1345 + 25919379-25920866,25921342-25921962,25922733-259228... 88 2e-17
11_01_0281 + 2086674-2087652,2089200-2089483 43 5e-04
12_01_0285 + 2120130-2121204,2122842-2123116 40 0.004
11_01_0277 + 2060328-2061061,2061360-2061420,2061560-2061679,206... 34 0.33
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 33 0.44
06_01_1014 - 7936514-7936530,7936768-7936859,7937290-7937581,793... 32 1.3
03_05_0954 - 29113938-29114024,29114277-29114444,29115156-291152... 31 3.1
02_04_0270 - 21439788-21441680 30 5.4
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340... 29 7.2
02_02_0057 - 6421591-6421797,6422225-6422399,6422944-6423104 29 7.2
01_05_0749 + 24890944-24891146,24891414-24891535,24891633-248917... 29 7.2
07_01_0890 - 7437901-7439339,7439452-7439657,7439841-7440171,744... 29 9.5
>07_03_1345 +
25919379-25920866,25921342-25921962,25922733-25922893,
25923284-25923422,25923509-25923592,25923944-25923982,
25924037-25924222,25924347-25924478,25924810-25925009,
25925294-25925498,25925618-25925944
Length = 1193
Score = 87.8 bits (208), Expect = 2e-17
Identities = 52/147 (35%), Positives = 70/147 (47%), Gaps = 6/147 (4%)
Query: 294 SYSFESVRCTFQVDNGCWYYEVTIVTPGVMQIGWATKNSHFLNHEGYGIGDDLYSLSYDG 353
S SF S R V NG W YEVT+ T GV Q+GWAT + F + +G G DD Y ++DG
Sbjct: 131 SASFSSARANTCVWNGKWMYEVTLETSGVQQLGWATLSCPFTDQKGVGDSDDSY--AFDG 188
Query: 354 CRKLIWYKAKPASVQDLPEWQPGDILGCLIDLNTREAIFSLNGRCLTPCTEIFETTRCCK 413
R W P + W GD++GC I+L+ E F NG L + +
Sbjct: 189 RRVTKW-NNDPEQYGQM--WAVGDVIGCCINLDAGEISFYRNGNFLGVAFDGIRKVG-PR 244
Query: 414 QGXXXXXXXXXXQQCRFNFGHLPFSFP 440
+G ++C NFG PF +P
Sbjct: 245 KGYYPAISLSEGERCHLNFGSHPFRYP 271
Score = 33.1 bits (72), Expect = 0.58
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 475 ASIPENACTLCYDAVADCTLEPCFH 499
AS E+ C +CY++ +D T EPC H
Sbjct: 1126 ASNEEDNCCICYNSDSDTTFEPCHH 1150
>11_01_0281 + 2086674-2087652,2089200-2089483
Length = 420
Score = 43.2 bits (97), Expect = 5e-04
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 264 DMTPINVILNSHDVSEYLKISCNGLEARCDSYSFESVRCTFQVDNGCWYYEVTIV---TP 320
D + V+L+ S+ +++S + L A + + VR T V G WY+EV ++ +
Sbjct: 170 DAPDLPVLLSRVFKSDKVEVSDDRLTAG-STKGYRMVRATRGVAAGAWYFEVKVLHLGST 228
Query: 321 GVMQIGWATKNSHFLNHEGYGIGDDLYSLSYDGCRKLIWYKAKPASVQDLPEWQPGDILG 380
G ++GWAT N+ GY D++ Y +KA A+ D + GD+LG
Sbjct: 229 GHTRLGWATNNADIHAPVGY----DVFGFGYRDMDGTKVHKAWRANYAD-QGYGEGDVLG 283
Query: 381 CLIDL 385
I L
Sbjct: 284 FYIHL 288
>12_01_0285 + 2120130-2121204,2122842-2123116
Length = 449
Score = 40.3 bits (90), Expect = 0.004
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 270 VILNSHDVSEYLKISCNGLEARCDSYSFESVRCTFQVDNGCWYYEVTIV---TPGVMQIG 326
V+L+ S+ +++S + L A + + VR T V G WY+EV ++ + G ++G
Sbjct: 173 VLLSRVFKSDKVEVSDDRLTAG-STKGYRMVRATRGVAAGAWYFEVKVLHLGSTGHTRLG 231
Query: 327 WATKNSHFLNHEGYGIGDDLYSLSYDGCRKLIWYKAKPASVQDLPEWQPGDILGCLIDL 385
WAT N+ GY D++ Y +KA A+ + + GD+LG I L
Sbjct: 232 WATNNADIHAPVGY----DVFGFGYRDMDGTKVHKAWRANYAE-QGYGDGDVLGFYIHL 285
>11_01_0277 +
2060328-2061061,2061360-2061420,2061560-2061679,
2061947-2062112,2062229-2062635
Length = 495
Score = 33.9 bits (74), Expect = 0.33
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 264 DMTPINVILNSHDVSEYLKISCNGLEARCDSYSFESVRCTFQVDNGCWYYEVTIV---TP 320
D + V+L+ S+ +++S + L A + + VR T V G WY+EV ++ +
Sbjct: 168 DAPDLPVLLSRVFKSDKVEVSDDRLTAG-STKGYRMVRATRGVAAGAWYFEVKVLHLGST 226
Query: 321 GVMQIGWATKNSHFL 335
G ++GWAT L
Sbjct: 227 GHTRLGWATDRIRIL 241
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 33.5 bits (73), Expect = 0.44
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 463 LPRRYYLEKV-RNASIPENACTLCYDAVADCTLEPCFH 499
LP R Y+E+V + E C +C +A D L PC H
Sbjct: 730 LPSRAYIEEVVQELQKGEGECPICLEAFEDAVLTPCAH 767
>06_01_1014 -
7936514-7936530,7936768-7936859,7937290-7937581,
7937690-7937759,7938131-7938223
Length = 187
Score = 31.9 bits (69), Expect = 1.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 479 ENACTLCYDAVADCTLEPCFH 499
EN C +CYDA C PC H
Sbjct: 122 ENVCKICYDAPRSCFFIPCGH 142
>03_05_0954 -
29113938-29114024,29114277-29114444,29115156-29115212,
29115314-29115369,29115463-29115572,29116142-29116310,
29116418-29116742,29117378-29117442,29117541-29117712,
29118191-29118484
Length = 500
Score = 30.7 bits (66), Expect = 3.1
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 262 TVDMTPINVILNSHDVSEYLKISCNGLEARCDSYSF---ESVRCTFQVDN--GCWYY 313
TVD I+ H V+ + ++CNG+E +C F + T +DN GC Y
Sbjct: 385 TVDKCTKVGIVFKHVVAAFEVVNCNGVEVQCQRLKFFNLQGTAPTISIDNTSGCQLY 441
>02_04_0270 - 21439788-21441680
Length = 630
Score = 29.9 bits (64), Expect = 5.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 365 ASVQDLPEWQPGDILGCLIDLNTREAIFSLNGR 397
AS + P+W+PG G +++ RE I +NGR
Sbjct: 523 ASDLEEPKWKPGRKSGARMNIGNREYIDDMNGR 555
>03_01_0438 +
3399203-3399297,3399389-3399480,3399638-3399750,
3400345-3400610,3400793-3400864,3401023-3401098,
3401241-3401339,3401432-3401586,3401679-3401783,
3401880-3401966,3402459-3402543,3402626-3402734,
3403468-3403544,3403635-3403715,3404137-3404328,
3404415-3404528,3404650-3404742,3404864-3404990,
3405075-3405151,3405455-3405502,3405588-3405657,
3405737-3405810,3405895-3406005,3406222-3406300,
3406936-3408320
Length = 1293
Score = 29.5 bits (63), Expect = 7.2
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 84 GWLQVVSSMVNVIPLDNPLGPSAITIVFDDCPLPSRDSVI 123
GW V+ M+ DN LGP ++ + + P+ R S++
Sbjct: 584 GWRPKVTDMIR--EYDNYLGPGSVLEILSETPIKERSSIV 621
>02_02_0057 - 6421591-6421797,6422225-6422399,6422944-6423104
Length = 180
Score = 29.5 bits (63), Expect = 7.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 244 QWALDNLFVIENRPLSYETVDMTPINVILNSHDVS 278
QW L++ +I+ RPL D+ P N+ L+S V+
Sbjct: 42 QWHLNHSCLIQRRPLPIIHCDLKPSNIFLDSEMVA 76
>01_05_0749 +
24890944-24891146,24891414-24891535,24891633-24891721,
24891813-24891848,24892268-24892367,24892524-24892566,
24892645-24892739,24892978-24893036,24893114-24893613,
24893691-24893772,24893864-24894429,24894520-24894655,
24894750-24894812,24894942-24895172,24895282-24895395
Length = 812
Score = 29.5 bits (63), Expect = 7.2
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 451 DYARLTDEEKKVLPRRYYLEKVRNASIPENACTLCYDAV-ADCTLEPCFH 499
D DE + V+P Y +K+R IP N + +D + A ++ C H
Sbjct: 433 DTVEAKDETEMVVPDNEYEKKIRPTVIPANEIGVTFDDIGALADIKECLH 482
>07_01_0890 -
7437901-7439339,7439452-7439657,7439841-7440171,
7440268-7440405,7440619-7440874,7440963-7441318,
7441421-7441709
Length = 1004
Score = 29.1 bits (62), Expect = 9.5
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 334 FLNHEGYGIGDDLYSLS-YDGCRKLIWYKAKPASVQDLPEWQPGDILGCLIDLNTREAIF 392
F + G GI +++ Y G R+ + + P S Q++ E G +G +I +F
Sbjct: 492 FRIYPGEGIYGEIHGKHIYIGNRRTLARASSPQSTQEMGEMIKGVSIGYVICDGELAGVF 551
Query: 393 SLNGRCLTPCTE 404
SL+ C T E
Sbjct: 552 SLSDDCRTGAAE 563
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.137 0.429
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,139,280
Number of Sequences: 37544
Number of extensions: 669480
Number of successful extensions: 1247
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1236
Number of HSP's gapped (non-prelim): 14
length of query: 546
length of database: 14,793,348
effective HSP length: 86
effective length of query: 460
effective length of database: 11,564,564
effective search space: 5319699440
effective search space used: 5319699440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)
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