GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000742-TA|BGIBMGA000742-PA|IPR003877|SPla/RYanodine
receptor SPRY, IPR001870|B302, (SPRY)-like
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    33   0.10 
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    29   1.3  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    28   3.8  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    27   6.7  

>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 33.1 bits (72), Expect = 0.10
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 12/131 (9%)

Query: 260 YETVDMTPINVILNSHDVSEYLKISCNGLEARCDSYSFESVRCTFQVDNGCWYYEVTIVT 319
           Y  +++ P    +N HD+S  + I  + L A  +   F   R    + +G WY+E+ I  
Sbjct: 340 YREIELPPFTSRINWHDISTPVFIDHSALCATVEK-GFRMARSNVFMTSGEWYFEIKIEK 398

Query: 320 PG-----VMQIGWATKNSHFLNHEGYGIGDDLYSLSYDGCRKLIWYKAKPASVQDLPEWQ 374
            G      ++IG + + +      GY      Y L   G +K+  + ++P +  D   + 
Sbjct: 399 GGGDDGAHVRIGVSRREAPLDAPVGYDAYS--YGLRDLGGQKV--HMSRPRNFMD--SFG 452

Query: 375 PGDILGCLIDL 385
            GDI+G  I L
Sbjct: 453 TGDIIGLHISL 463


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 311 WYYEVTIVTPGVMQIGWATKNSHFLN-HEGY 340
           W   +TIV PG MQ  WA+ N  +   H  Y
Sbjct: 170 WNIAITIVQPGGMQTEWASSNMQWAKPHPAY 200


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 371 PEWQPGDILGCLIDLNTREAIFSLNGRCL 399
           PE+  GDI+GC ++   R   ++ NG  L
Sbjct: 172 PEFTTGDIIGCGVNFINRTIFYTKNGAYL 200


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 43  DPSIVDQLVMEMLTLIASFVDNDEESPVLLVKLHVIADKEEG-WLQVVSSMVNVIPLD 99
           D +IV     E    I SFVD D   P   V LH  A    G  L     M+NV+ LD
Sbjct: 126 DHAIVSTAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLD 183


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.137    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,718
Number of Sequences: 5004
Number of extensions: 109566
Number of successful extensions: 245
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 5
length of query: 546
length of database: 2,362,478
effective HSP length: 76
effective length of query: 470
effective length of database: 1,982,174
effective search space: 931621780
effective search space used: 931621780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)