GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000742-TA|BGIBMGA000742-PA|IPR003877|SPla/RYanodine
receptor SPRY, IPR001870|B302, (SPRY)-like
         (546 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   6e-18
SB_48080| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   2e-09
SB_12174| Best HMM Match : SPRY (HMM E-Value=5.9e-05)                  57   4e-08
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)                  44   2e-04
SB_6995| Best HMM Match : DUF740 (HMM E-Value=2.4)                     34   0.25 
SB_22188| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.4  
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.4  
SB_23703| Best HMM Match : TTL (HMM E-Value=0)                         30   4.1  
SB_7977| Best HMM Match : MOZ_SAS (HMM E-Value=3.4e-21)                30   4.1  
SB_51790| Best HMM Match : TTL (HMM E-Value=0)                         30   4.1  
SB_18517| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.5  
SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.2  
SB_10928| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.2  
SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)                 29   9.6  
SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.6  

>SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1273

 Score = 89.4 bits (212), Expect = 6e-18
 Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 18/171 (10%)

Query: 281 LKISCNGLEARCDSYSFESVRCTFQVDNGC---------WYYEVTIVTPGVMQIGWATKN 331
           L +S + LEA   +++FES+R T+ V +           WYYEV + + G+MQIGW T+ 
Sbjct: 762 LVLSADRLEAYNMNWTFESIRATYCVGHAMYKASPHPSGWYYEVILKSNGIMQIGWQTEE 821

Query: 332 SHFLNHEGYGIGDDLYSLSYDGCRKLIWYKAKPASVQDLP---EWQPGDILGCLIDLNTR 388
             +    G G+GDD +S ++DG R  IW    P+  Q+     EWQ GD+L CL      
Sbjct: 822 CRYGPERGVGVGDDKHSCAFDGARCKIW-SGPPSEQQNNDYGVEWQIGDVLSCLFSWE-G 879

Query: 389 EAIFSLNGRCLTPCTEIFETTRCCKQGXXXXXXXXXXQQCRFNFGHLPFSF 439
           +  F LNGR       +  T+                Q C FNFG +PF +
Sbjct: 880 DVSFWLNGR----DHGVAFTSLNTSINWYPAVSLAMDQHCIFNFGSMPFRY 926


>SB_48080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 61.3 bits (142), Expect = 2e-09
 Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 4/94 (4%)

Query: 314 EVTIVTPGVMQIGWATKNSHFLNHEGYGIGDDLYSLSYDGCRKLIWY-KAKPASVQDLPE 372
           +V   + G MQ+GWA          G G GDD +S +YDG R L W+  AK    +   +
Sbjct: 110 KVLTFSGGYMQLGWADDGFSAAADTGQGCGDDSHSWAYDGTRTLKWHANAKEPYGR---K 166

Query: 373 WQPGDILGCLIDLNTREAIFSLNGRCLTPCTEIF 406
           W+ GD +G  +DL+  E  FSLNG   +P    F
Sbjct: 167 WKEGDTVGIAVDLDQGEVSFSLNGDWSSPMGTAF 200


>SB_12174| Best HMM Match : SPRY (HMM E-Value=5.9e-05)
          Length = 128

 Score = 56.8 bits (131), Expect = 4e-08
 Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 9/116 (7%)

Query: 327 WATKNSHFLNHEGYGIGDDLYSLSYDGCRKLIWYKAKPASVQDLP---EWQPGDILGCLI 383
           W T+   +    G G+GDD +S ++DG R  IW    P+  Q+     EWQ GD+L CL 
Sbjct: 2   WQTEECRYGPERGVGVGDDKHSCAFDGARCKIW-SGPPSEQQNNDYGVEWQIGDVLSCLF 60

Query: 384 DLNTREAIFSLNGRCLTPCTEIFETTRCCKQGXXXXXXXXXXQQCRFNFGHLPFSF 439
                +  F LNGR       +  T+                Q C FNFG +PF +
Sbjct: 61  SWE-GDVSFWLNGR----DHGVAFTSLNTSINWYPAVSLAMDQHCIFNFGSMPFRY 111


>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
          Length = 635

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 15/107 (14%)

Query: 293 DSYSFESVRCTFQVDNGCWYYEVTIVTPGVMQIGWATKNSHF---LNHEGYGIGDDLYSL 349
           D Y ++  R T  V  G +YYE T+   G+ ++GW+T ++      + EG+G G      
Sbjct: 17  DFYKWQGCRSTLGVKKGKYYYEATVTDEGLCRVGWSTAHATLDLGTDEEGFGFG-GTGKK 75

Query: 350 SYDGCRKLIWYKAKPASVQDLPEWQPGDILGCLIDLNTREAIFSLNG 396
           SY+  R+   Y  +P  +         D +GC I+L+     +S NG
Sbjct: 76  SYN--RQFDTY-GEPFGI--------NDTIGCYINLDNGTVKYSKNG 111


>SB_6995| Best HMM Match : DUF740 (HMM E-Value=2.4)
          Length = 671

 Score = 34.3 bits (75), Expect = 0.25
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 12  EREMYSPTAGPASASMSLSPGDARLRAMKALDPSIVDQLVMEMLTLIASFVDNDEESPVL 71
           +   +  T  P S S     G    + M  L+P  V +L   + TL +  V N    PV 
Sbjct: 439 DSSQFIDTVDPVSLSKESGSGAQSTQTMSTLNPGSVAELSQSIKTLDSVSVSNQSMDPVD 498

Query: 72  LVKLHV-IADKEEGWLQVVSSM 92
            +   V I DKE G  Q++ +M
Sbjct: 499 SLSGSVDILDKESGSRQMMDTM 520


>SB_22188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1046

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 17/63 (26%), Positives = 33/63 (52%)

Query: 73  VKLHVIADKEEGWLQVVSSMVNVIPLDNPLGPSAITIVFDDCPLPSRDSVIKLTKLFRLS 132
           +K+  + +  EG  +++    N + L      ++I  V  D P+P+R+S+   T   RL+
Sbjct: 847 IKVENVVESVEGLHKLLRRARNNLILREEKSKASIQSVVADVPIPTRESIASPTTQKRLA 906

Query: 133 RQR 135
           RQ+
Sbjct: 907 RQK 909


>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2806

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 12/102 (11%)

Query: 11   DEREMYSPTAGPASASMSLSPGDARLRAMKALDPSIVDQLVMEMLTLIASFVDNDEESP- 69
            D+  MY  T G    + SL P    LR  ++L      + +    TLI    D  +ESP 
Sbjct: 1777 DQSLMYKSTFGNTGKAFSLDPKTGELRTARSL------RGLQREFTLIIKATDGIQESPD 1830

Query: 70   --VLLVKLHVIADKEEGWLQVVSSMVNVIPLDNPLGPSAITI 109
               +++K+ ++  ++   LQ   + V+   +D+PL   A+ I
Sbjct: 1831 THPVILKISIVGGRQARKLQ---NHVSTKCVDSPLYAKALKI 1869


>SB_23703| Best HMM Match : TTL (HMM E-Value=0)
          Length = 657

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 430 FNFGHLPFSFPPTDRPFMAFNDYARLTDEEKKV-LPRRYYLEKVRNASIPENACTLCYDA 488
           FNF  L F+ P   R F+A  +Y++  D  K + + +   L + R   + EN   L YD+
Sbjct: 93  FNFAPLSFNLPNDYRKFVA--EYSKKKDATKNIWICKPADLSRGRGIFLFENLLDLTYDS 150

Query: 489 VA 490
            A
Sbjct: 151 AA 152


>SB_7977| Best HMM Match : MOZ_SAS (HMM E-Value=3.4e-21)
          Length = 570

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 213 RFDKEDVNPLLKLE-KLANNEDYVWRQVGFCAQWALDNLFVIENRPLSYE-TVDMT 266
           +F +E  N +L    +LAN +  + +      +WA  NLF++ NR L     VDMT
Sbjct: 450 KFTEEKNNEILNYNNQLANLQTKLEKTQSVAVKWATHNLFMLVNRHLGQTGMVDMT 505


>SB_51790| Best HMM Match : TTL (HMM E-Value=0)
          Length = 536

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 430 FNFGHLPFSFPPTDRPFMAFNDYARLTDEEKKV-LPRRYYLEKVRNASIPENACTLCYDA 488
           FNF  L F+ P   R F+A  +Y++  D  K + + +   L + R   + EN   L YD+
Sbjct: 93  FNFAPLSFNLPNDYRKFVA--EYSKKKDATKNIWICKPADLSRGRGIFLFENLLDLTYDS 150

Query: 489 VA 490
            A
Sbjct: 151 AA 152


>SB_18517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 250 LFVIENRPLSYETVDMTPINVILNSHDVSEYLKISC 285
           L  I N+ +++  +D+ P N+I+NSHDV +     C
Sbjct: 183 LEAIHNKNIAH--LDLKPSNIIVNSHDVCKLADFGC 216


>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2070

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 253  IENRPLSYETVDMTPINVILNSHDVSEY---LKISCNGLEARCDSYSFESV 300
            +EN P  ++ V+ T +N ILN+     Y   LK S + +    D Y  +SV
Sbjct: 1067 VENLPTQFDGVEYTEVNRILNALYKLTYFWVLKFSYSSISTNPDDYEGQSV 1117


>SB_10928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 447 MAFNDYARLTDEEKKVLPRRYYLEKVRNASIPENACTLCYDAVADCTLE---PCFHN 500
           + +ND+  +T+  KK   R Y+L +++ A +P+    L Y +     ++   P F+N
Sbjct: 873 LTWNDH--VTEVTKKASKRLYFLTQLKRAGVPQQELVLFYTSCVRSLMDYTAPVFYN 927


>SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)
          Length = 1016

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 310 CWYYEVTIVTPGVMQIGWATKNSHFLNHEGYGIGDDLYSLSYD 352
           CWYY+V + +  V   G    + H  +++ +   DD++  SYD
Sbjct: 194 CWYYDVHLTSDDVHLTG---DDVHLTSYDVHLTSDDVHLTSYD 233


>SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 184 NFEPCIVLFALIALEKFAHTTENKLVIRSRFDKEDVNPLLKLEKLANNEDY-VWRQVGFC 242
           +F+  + L  +      +   ++    R++   ++ NPL KL+    ++ Y + R+    
Sbjct: 186 SFKQVMTLVVIFVFHSQSSGAKDTYASRAKVKTQNTNPLKKLQHSLEDQIYSILRKARLL 245

Query: 243 AQWALDNLFVIENR----PLSYETVDMTPINVILN 273
              +  +LF + +      +   T    PIN++LN
Sbjct: 246 GSLSSSSLFTVSSNHAFVHVQPNTASFDPINILLN 280


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.137    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,779,683
Number of Sequences: 59808
Number of extensions: 773127
Number of successful extensions: 1400
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1389
Number of HSP's gapped (non-prelim): 17
length of query: 546
length of database: 16,821,457
effective HSP length: 86
effective length of query: 460
effective length of database: 11,677,969
effective search space: 5371865740
effective search space used: 5371865740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)