Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000742-TA|BGIBMGA000742-PA|IPR003877|SPla/RYanodine
receptor SPRY, IPR001870|B302, (SPRY)-like
(546 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81505-1|CAB04122.1| 673|Caenorhabditis elegans Hypothetical pr... 434 e-122
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 74 2e-13
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 74 2e-13
U53150-10|AAA96130.3| 433|Caenorhabditis elegans Hypothetical p... 59 9e-09
AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical... 49 1e-05
AL023828-3|CAA19468.1| 572|Caenorhabditis elegans Hypothetical ... 33 0.52
AL023828-2|CAA19449.1| 570|Caenorhabditis elegans Hypothetical ... 33 0.52
AL032643-5|CAA21656.1| 622|Caenorhabditis elegans Hypothetical ... 33 0.68
AC084158-7|AAK68560.1| 929|Caenorhabditis elegans Hypothetical ... 31 2.1
U29381-9|AAA68749.2| 503|Caenorhabditis elegans Prion-like-(q/n... 29 6.4
U29381-4|AAM98023.1| 511|Caenorhabditis elegans Prion-like-(q/n... 29 6.4
>Z81505-1|CAB04122.1| 673|Caenorhabditis elegans Hypothetical
protein F16A11.1 protein.
Length = 673
Score = 434 bits (1069), Expect = e-122
Identities = 215/473 (45%), Positives = 302/473 (63%), Gaps = 21/473 (4%)
Query: 47 VDQLVMEMLTLIASFVDNDEESPVLLVKLHVIADKEEGWLQVVSSMVNVIPLDNPLGPSA 106
+ +L++E L +I + V+N++E P L+KL+ IAD+E+GW VV +++ IP ++PLGP+
Sbjct: 112 IKELIIETLEVIRTLVNNEQEPPQSLLKLNFIADEEKGWTMVVRALIYTIPENDPLGPAV 171
Query: 107 ITIVFDDCPLPSRDSVIKLTKLFRLSRQRALSNALDVKMKRNMCVVLGCIAEKLAGPNSV 166
I++ D+CPLPSR+SV L LS + S L +NMC+VLG +AEK+AG +V
Sbjct: 172 ISLFLDECPLPSRESVQTLLLSLGLSSEFVDSKHLPPSWHKNMCIVLGSLAEKMAGSAAV 231
Query: 167 AVLTEETLDFLLAFLD---TNFEP------------CIVLFALIALEKFAHTTENKLVIR 211
+ ++ +L+ + T F P C+ +FAL+ALEKFA T EN++ I
Sbjct: 232 TMFNDKIKGYLMKIICYGLTYFPPNYGKTLKEKNTHCVRMFALLALEKFAQTRENQISIC 291
Query: 212 SRFDKEDVNPLLKLEKLANNEDY--VW--RQVGFCAQWALDNLFVIENRPLSYETVDMTP 267
F + +PL+K+E+ NE+ W +Q GFCAQWALDN+F++E+RP SYET + +
Sbjct: 292 KMFTEMTTHPLIKMEEYLKNEEVSRYWFAKQEGFCAQWALDNIFILESRPYSYETCETSK 351
Query: 268 INVILNSHDVSEYLKISCNGLEARCDSYSFESVRCTFQVDNGCWYYEVTIVTPGVMQIGW 327
IN +LN DVSEYLKI +GLEARCD SFESVRCTF+V +G WYYE T++T GVMQIG
Sbjct: 352 INAMLNHEDVSEYLKIGPDGLEARCDVSSFESVRCTFEVMDGVWYYEATVLTSGVMQIGL 411
Query: 328 ATKNSHFLNHEGYGIGDDLYSLSYDGCRKLIWYKAKPASVQDLPEWQPGDILGCLIDLNT 387
ATK S FLNHEGYGIGDD S++YDGCR+L+WY AK + + WQPGD++G L+++
Sbjct: 412 ATKRSRFLNHEGYGIGDDASSVAYDGCRQLVWYNAK-SHKHEHENWQPGDVIGVLLNIPE 470
Query: 388 REAIFSLNGRCLTPCTEIFETTRCCKQGXXXXXXXXXXQQCRFNFGHLPFSFPPTDRPFM 447
E +F LNG L F + R +G QQCRFNFG F + P + F
Sbjct: 471 GEVVFYLNGTPLKEPETEFLSNRQPSEGVFAAASFMSFQQCRFNFGASRFKYNP-GKKFR 529
Query: 448 AFNDYARLTDEEKKVLPRRYYLEKVRNASIPENACTLCYDAVADCTLEPCFHN 500
FND+ +L+ E++ ++PRR LE + IPE+ CT+C+ A TL PC H+
Sbjct: 530 CFNDFGKLSTEQRTIVPRRLRLELLEKEHIPEDYCTICFAAPGSTTLLPCNHD 582
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 74.1 bits (174), Expect = 2e-13
Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 9/181 (4%)
Query: 255 NRPLSYETVDMTPINVILNSHDVSEYLKISCNGLEARCDSYSFESVRCTFQVDNGCWYYE 314
NR + E + + I E+ +++ L AR D+ T+ V G WY+E
Sbjct: 916 NRESAAENIRALQLFGIFLEPPAHEHDEVAEKELRARKDNTRTYRAEATYAVCGGKWYFE 975
Query: 315 VTIVTPGVMQIGWATKNSHFLNHEGYGIGDDLYSLSYDGCRKLIWYKAKPASVQDLPEWQ 374
I+T G M+IGW S +G D S ++DG W++ + EW+
Sbjct: 976 FEILTAGYMKIGWMDIGST----PEIQLGADDRSYAFDGYLGRKWHQGAETYGK---EWK 1028
Query: 375 PGDILGCLIDLNTREAIFSLNGR-CLTPC-TEIFETTRCCKQGXXXXXXXXXXQQCRFNF 432
GD++GC +DLN R FSLNG L P +E+ C G Q+ R NF
Sbjct: 1029 IGDVVGCFLDLNDRTISFSLNGELLLDPSGSEMAFDNVVCGDGLVPAMTLGSGQRGRLNF 1088
Query: 433 G 433
G
Sbjct: 1089 G 1089
Score = 43.6 bits (98), Expect = 4e-04
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 341 GIGDDLYSLSYDGCRKLIWYKAKPASVQDLPEWQPGDILGCLIDLNTREAIFSLNG 396
G+GDD YS +DG K +++ K V + GD++GC IDL E FS+NG
Sbjct: 593 GVGDDFYSYGFDG--KSMYFGGKSRRVGH-KLLEKGDVIGCSIDLTIPEIKFSVNG 645
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 74.1 bits (174), Expect = 2e-13
Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 9/181 (4%)
Query: 255 NRPLSYETVDMTPINVILNSHDVSEYLKISCNGLEARCDSYSFESVRCTFQVDNGCWYYE 314
NR + E + + I E+ +++ L AR D+ T+ V G WY+E
Sbjct: 1037 NRESAAENIRALQLFGIFLEPPAHEHDEVAEKELRARKDNTRTYRAEATYAVCGGKWYFE 1096
Query: 315 VTIVTPGVMQIGWATKNSHFLNHEGYGIGDDLYSLSYDGCRKLIWYKAKPASVQDLPEWQ 374
I+T G M+IGW S +G D S ++DG W++ + EW+
Sbjct: 1097 FEILTAGYMKIGWMDIGST----PEIQLGADDRSYAFDGYLGRKWHQGAETYGK---EWK 1149
Query: 375 PGDILGCLIDLNTREAIFSLNGR-CLTPC-TEIFETTRCCKQGXXXXXXXXXXQQCRFNF 432
GD++GC +DLN R FSLNG L P +E+ C G Q+ R NF
Sbjct: 1150 IGDVVGCFLDLNDRTISFSLNGELLLDPSGSEMAFDNVVCGDGLVPAMTLGSGQRGRLNF 1209
Query: 433 G 433
G
Sbjct: 1210 G 1210
Score = 43.6 bits (98), Expect = 4e-04
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 341 GIGDDLYSLSYDGCRKLIWYKAKPASVQDLPEWQPGDILGCLIDLNTREAIFSLNG 396
G+GDD YS +DG K +++ K V + GD++GC IDL E FS+NG
Sbjct: 714 GVGDDFYSYGFDG--KSMYFGGKSRRVGH-KLLEKGDVIGCSIDLTIPEIKFSVNG 766
>U53150-10|AAA96130.3| 433|Caenorhabditis elegans Hypothetical
protein F20A1.9 protein.
Length = 433
Score = 58.8 bits (136), Expect = 9e-09
Identities = 57/193 (29%), Positives = 83/193 (43%), Gaps = 19/193 (9%)
Query: 264 DMTPINVILNSHDVSEYLKISCNGLEARCD-SYSFESVRCTFQV-DNGCWYYEVTIVTPG 321
D +P LN D +L+I GL + + + R T + NG +YYEVTI + G
Sbjct: 3 DTSPRESKLNKQDQDLHLEIDETGLACKSEVKKRWLGARGTAGLYGNGKYYYEVTITSKG 62
Query: 322 VMQIGWATKNSHFLNHEGYGIGDDLYSLSYDGCRKLIWYKAKPASVQDLPEWQPGDILGC 381
+ ++GWAT LN IG L S Y G + K LP + D++GC
Sbjct: 63 LCRVGWATLGGS-LN-----IGKGLDSFGYGGTGMKSTH--KKFDDYGLP-FTLNDVIGC 113
Query: 382 LIDLNTREAIFSLNGRCLTPCTEI---FETTRCCKQGXXXXXXXXXXQQCRFNFGHLPFS 438
+DL++R +S NG I ++ + C NFG PF
Sbjct: 114 YLDLDSRTIWWSKNGEQFPAAFSIDVKYKNSNTC----LFPAVLCQNSSLSVNFGSQPFK 169
Query: 439 FPPTDRPFMAFND 451
FPP ++ F A +D
Sbjct: 170 FPPGNQ-FTAVSD 181
>AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical
protein Y55F3BR.1 protein.
Length = 728
Score = 48.8 bits (111), Expect = 1e-05
Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Query: 272 LNSHDVSEYLKISCNGLEARCD-SYSFESVRCTFQV-DNGCWYYEVTIVTPGVMQIGWAT 329
LN D L+I GL + + R T + NG +YYEVT+ G+ ++GWAT
Sbjct: 89 LNREDRDVSLQIDKTGLNCESRVAKEWHGARATAGLYGNGKYYYEVTVTRDGLCRVGWAT 148
Query: 330 KNSHFLNHEGYGIGDDLYSLSYDGCRKLIWYKAKPASVQDL-PEWQPGDILGCLIDLNTR 388
+ IG D S Y G K K+ D + D+LGC +DL+
Sbjct: 149 LSG------SLKIGTDFESFGYGGTGK----KSFGKKFDDYGTSFTTNDVLGCFLDLDEL 198
Query: 389 EAIFSLNG 396
+ +S NG
Sbjct: 199 KIWWSKNG 206
>AL023828-3|CAA19468.1| 572|Caenorhabditis elegans Hypothetical
protein Y17G7B.2b protein.
Length = 572
Score = 33.1 bits (72), Expect = 0.52
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 270 VILNSHDVSEYLKISCNGLEARCDSYSFESVRCTFQVDNGCWYYEVTI---VTPGVMQIG 326
V ++S+D + L I+ N + + YS R + V G WY+EV ++IG
Sbjct: 303 VNVSSNDRAFQLSINGNSITG-FEGYSM--ARASHGVSKGTWYFEVNFDDQPDDSHIRIG 359
Query: 327 WATKNSHFLNHEGYGIGDDLYSLSYDGCRKLIWYKAKPASVQDLPEWQPGDILGCLIDL 385
W+ + GY + +S + +++AK ++ GD+LGCLI L
Sbjct: 360 WSQSYASLQACVGY----NKFSYGWRSKHGTKFHEAKGKKYH-FGGFKQGDVLGCLIHL 413
>AL023828-2|CAA19449.1| 570|Caenorhabditis elegans Hypothetical
protein Y17G7B.2a protein.
Length = 570
Score = 33.1 bits (72), Expect = 0.52
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 270 VILNSHDVSEYLKISCNGLEARCDSYSFESVRCTFQVDNGCWYYEVTI---VTPGVMQIG 326
V ++S+D + L I+ N + + YS R + V G WY+EV ++IG
Sbjct: 301 VNVSSNDRAFQLSINGNSITG-FEGYSM--ARASHGVSKGTWYFEVNFDDQPDDSHIRIG 357
Query: 327 WATKNSHFLNHEGYGIGDDLYSLSYDGCRKLIWYKAKPASVQDLPEWQPGDILGCLIDL 385
W+ + GY + +S + +++AK ++ GD+LGCLI L
Sbjct: 358 WSQSYASLQACVGY----NKFSYGWRSKHGTKFHEAKGKKYH-FGGFKQGDVLGCLIHL 411
>AL032643-5|CAA21656.1| 622|Caenorhabditis elegans Hypothetical
protein Y54E5A.7 protein.
Length = 622
Score = 32.7 bits (71), Expect = 0.68
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 309 GCWYYEVTIVT--PGVMQIGWATKNSHFLNHEGYGIGDDLYSLSYDGCRKLIWYKAKPAS 366
G +Y+EV I+ G M IG + K+ G+ G Y DG ++ A
Sbjct: 94 GVYYFEVRILEGHSGCMGIGLSKKDCDLNRMPGWDPGCFGYH-GDDGN----FFLASGVG 148
Query: 367 VQDLPEWQPGDILGCLIDLNTREAIFSLNGRCL 399
P++ PGD++GC ID F+ NG+ L
Sbjct: 149 QAYGPKFGPGDVIGCGIDTFYHYVFFTKNGKHL 181
>AC084158-7|AAK68560.1| 929|Caenorhabditis elegans Hypothetical
protein Y69A2AR.16 protein.
Length = 929
Score = 31.1 bits (67), Expect = 2.1
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 32 GDARLRAMKALDPSIVDQLVMEMLTLIASFVDNDEESPVLLVKLHVIAD 80
G R R L S + QL++++ T ++ ++DN++ES L L I D
Sbjct: 628 GLMRSRNQNELVVSNILQLILDVTTKVSIYIDNEDESNALYASLLQIVD 676
>U29381-9|AAA68749.2| 503|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 35,
isoform a protein.
Length = 503
Score = 29.5 bits (63), Expect = 6.4
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 77 VIADKEEGWLQVVSSMVNVIPLDNPLGP----SAITIVFDDCPLPSRDS 121
+ ADKE+ W SS NVI D L P + I DD P+ S D+
Sbjct: 442 ISADKEKAWAPPASSEENVISPDASLEPINDGKFLPIRSDDKPIDSADA 490
>U29381-4|AAM98023.1| 511|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 35,
isoform b protein.
Length = 511
Score = 29.5 bits (63), Expect = 6.4
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 77 VIADKEEGWLQVVSSMVNVIPLDNPLGP----SAITIVFDDCPLPSRDS 121
+ ADKE+ W SS NVI D L P + I DD P+ S D+
Sbjct: 450 ISADKEKAWAPPASSEENVISPDASLEPINDGKFLPIRSDDKPIDSADA 498
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.137 0.429
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,951,759
Number of Sequences: 27539
Number of extensions: 600540
Number of successful extensions: 1123
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1097
Number of HSP's gapped (non-prelim): 16
length of query: 546
length of database: 12,573,161
effective HSP length: 85
effective length of query: 461
effective length of database: 10,232,346
effective search space: 4717111506
effective search space used: 4717111506
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -