GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000742-TA|BGIBMGA000742-PA|IPR003877|SPla/RYanodine
receptor SPRY, IPR001870|B302, (SPRY)-like
         (546 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    26   0.92 
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    24   3.7  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    24   3.7  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    24   3.7  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 25.8 bits (54), Expect = 0.92
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 197 LEKFAHTTENKLVIRSRFDKEDVNPLLKLEKLANNEDY 234
           +E  +HTT++ + I +  D   VNP ++L +L  + +Y
Sbjct: 150 IESLSHTTQDLVFIWNMTDPLVVNPEIELPQLDISNNY 187


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 188 CIVLFALIALEKFAHTTENKLVIRSRFDKEDVNPLLKLEKLANN 231
           C+VL A I L   A   E+     S+FD  +V+ +L  ++L NN
Sbjct: 7   CLVLMAAIVLVA-ARPDES---YTSKFDNINVDEILHSDRLLNN 46


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 188 CIVLFALIALEKFAHTTENKLVIRSRFDKEDVNPLLKLEKLANN 231
           C+VL A I L   A   E+     S+FD  +V+ +L  ++L NN
Sbjct: 7   CLVLMAAIVLVA-ARPDES---YTSKFDNINVDEILHSDRLLNN 46


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 188 CIVLFALIALEKFAHTTENKLVIRSRFDKEDVNPLLKLEKLANN 231
           C+VL A I L   A   E+     S+FD  +V+ +L  ++L NN
Sbjct: 7   CLVLMAAIVLVA-ARPDES---YTSKFDNINVDEILHSDRLLNN 46


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,426
Number of Sequences: 429
Number of extensions: 6251
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 546
length of database: 140,377
effective HSP length: 61
effective length of query: 485
effective length of database: 114,208
effective search space: 55390880
effective search space used: 55390880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)