GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000741-TA|BGIBMGA000741-PA|undefined
         (157 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575...    27   7.0  
03_01_0455 + 3487354-3488090,3489172-3489255,3489942-3490554,349...    27   9.2  

>03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,
            5753632-5753820,5753911-5754013,5754087-5754269,
            5754392-5754484,5755031-5755219,5756133-5756327
          Length = 1306

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 39   RAHGETGGVRVTRQADDIPVFDRNKVS 65
            R+H E  G+R  RQA D   +DR + S
Sbjct: 1156 RSHSERSGIRSDRQAADENQYDRQRRS 1182


>03_01_0455 + 3487354-3488090,3489172-3489255,3489942-3490554,
            3491356-3491583,3492270-3492437,3492828-3494587,
            3494667-3494670
          Length = 1197

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 44   TGGVRVTRQADDIPVFDRNKVSLDFPGSL--FGPSVSLLIRTTKIIGDVVQNSAVRYQSF 101
            TGG    ++   +  F+ +  +  F GS+   G  +SL+  +  +I DV +N +V  Q+ 
Sbjct: 1055 TGGSTQDQREQAVHRFNNSPDARVFFGSIKACGEGISLVGASRIVILDVHENPSVMRQAI 1114

Query: 102  LRLFRP 107
             R +RP
Sbjct: 1115 GRAYRP 1120


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.140    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,755
Number of Sequences: 37544
Number of extensions: 83214
Number of successful extensions: 161
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 2
length of query: 157
length of database: 14,793,348
effective HSP length: 76
effective length of query: 81
effective length of database: 11,940,004
effective search space: 967140324
effective search space used: 967140324
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)