GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000741-TA|BGIBMGA000741-PA|undefined
         (157 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U43375-10|AAA83627.1|  520|Caenorhabditis elegans Hypothetical p...    30   0.66 

>U43375-10|AAA83627.1|  520|Caenorhabditis elegans Hypothetical
           protein K09C4.1a protein.
          Length = 520

 Score = 30.3 bits (65), Expect = 0.66
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 56  IPVFDRNKVSLDFPGSLFGPSVSLLIRTTKIIGDVVQNSAV--RYQSFLRLFRPLFRGPF 113
           +PV   N + + F   LF PS    +    + G +  NS +   Y     +F P+F  PF
Sbjct: 379 VPVTGANSIRVLFVTELFPPSARTAVGQAMLFGSMAVNSPIVALYPIVNSIFPPIFFVPF 438

Query: 114 EI 115
            I
Sbjct: 439 VI 440


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.140    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,469
Number of Sequences: 27539
Number of extensions: 66529
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 1
length of query: 157
length of database: 12,573,161
effective HSP length: 76
effective length of query: 81
effective length of database: 10,480,197
effective search space: 848895957
effective search space used: 848895957
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)