Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000740-TA|BGIBMGA000740-PA|undefined
         (86 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    22   1.1  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    21   1.8  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    21   1.8  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory
          receptor candidate 34 protein.
          Length = 324

 Score = 21.8 bits (44), Expect = 1.1
 Identities = 7/27 (25%), Positives = 16/27 (59%)

Query: 60 VKLFDYLGCQVSLTKNQLVHWFNIWHV 86
          +K + Y+   VS+  + + ++FN W +
Sbjct: 48 LKSYTYIKLVVSVLMDFIAYFFNFWTI 74


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 1.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 70  VSLTKNQLVHWFNIWHV 86
           +S+ KN L + FN++H+
Sbjct: 277 LSIVKNCLSYCFNLYHL 293


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 1.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 70  VSLTKNQLVHWFNIWHV 86
           +S+ KN L + FN++H+
Sbjct: 277 LSIVKNCLSYCFNLYHL 293


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,369
Number of Sequences: 317
Number of extensions: 301
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 86
length of database: 114,650
effective HSP length: 47
effective length of query: 39
effective length of database: 99,751
effective search space:  3890289
effective search space used:  3890289
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.5 bits)
S2: 36 (18.6 bits)