Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000740-TA|BGIBMGA000740-PA|undefined
         (86 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11567| Best HMM Match : Peptidase_M13 (HMM E-Value=9.1)             26   3.8  
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.8  
SB_32384| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.6  
SB_35963| Best HMM Match : Cadherin (HMM E-Value=0)                    25   8.7  
SB_34907| Best HMM Match : Cadherin (HMM E-Value=0)                    25   8.7  
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)                     25   8.7  

>SB_11567| Best HMM Match : Peptidase_M13 (HMM E-Value=9.1)
          Length = 285

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 3/29 (10%)

Query: 55 KAAKAVKLFDYLGCQVSLTKNQLVHWFNI 83
          KA   ++LFD+   Q+SLT+N+   WF+I
Sbjct: 17 KAPSFLELFDHRVIQLSLTRNR---WFDI 42


>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3003

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 3/29 (10%)

Query: 55  KAAKAVKLFDYLGCQVSLTKNQLVHWFNI 83
           KA   ++LFD+   Q+SLT+N+   WF+I
Sbjct: 796 KAPSFLELFDHRVIQLSLTRNR---WFDI 821


>SB_32384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)

Query: 48  RKKRLDSKAAKAVKLFDYLGCQ-----VSLTKNQLVH 79
           +KK+L+ K  + + L  YLG Q       L KNQ VH
Sbjct: 347 KKKKLEDKKLEKIPLGVYLGGQDTDHCAHLAKNQCVH 383


>SB_35963| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 864

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 50 KRLDSKAAKAVKLFDYLGCQVSLTKNQLVH 79
          + LD+ +  A++LFD     V +TKN LV+
Sbjct: 65 RALDTASQSALRLFDISEDGVVVTKNPLVY 94


>SB_34907| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 697

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 50 KRLDSKAAKAVKLFDYLGCQVSLTKNQLVH 79
          + LD+ +  A++LFD     V +TKN LV+
Sbjct: 61 RALDTASQSALRLFDISEDGVVVTKNPLVY 90


>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
          Length = 2440

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/16 (56%), Positives = 14/16 (87%)

Query: 15   SIISEREGVQARRDGD 30
            +I+S++EGV + RDGD
Sbjct: 1181 AIVSDQEGVMSPRDGD 1196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,036,383
Number of Sequences: 59808
Number of extensions: 46649
Number of successful extensions: 62
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 6
length of query: 86
length of database: 16,821,457
effective HSP length: 63
effective length of query: 23
effective length of database: 13,053,553
effective search space: 300231719
effective search space used: 300231719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)