GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000740-TA|BGIBMGA000740-PA|undefined
         (86 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433...    26   4.3  
03_05_0692 + 26800698-26800704,26802174-26802304,26802747-268028...    25   5.7  
01_07_0198 - 41918276-41918408,41918486-41918841,41919091-419192...    25   5.7  
05_04_0126 + 18252594-18256922                                         25   7.5  
05_05_0335 - 24164714-24165574                                         25   10.0 
01_06_1522 - 37962431-37963060,37963216-37963542                       25   10.0 

>05_04_0149 -
           18441561-18442082,18442723-18442861,18443295-18443352,
           18443630-18443664,18444528-18444886,18445304-18445450,
           18445849-18447954,18448300-18448494,18448629-18448709,
           18448758-18448874,18449281-18449370,18449466-18449552,
           18450293-18450315,18450675-18450804
          Length = 1362

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 50  KRLDSKAAKAVKLFDYLGCQVSLTKNQLVHW 80
           K +DS+ +K  K F++   +VS   N   HW
Sbjct: 836 KHMDSRTSKKNKKFEFNSSRVSPIPNGSSHW 866


>03_05_0692 +
           26800698-26800704,26802174-26802304,26802747-26802899,
           26803025-26803092,26803739-26803745,26803931-26804038,
           26804749-26804919,26805007-26805090
          Length = 242

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 48  RKKRLDSKAAKAVKLFDYLGCQVSLTKNQLVHWFN 82
           RK  L S+  KAVK  DYL      TK   + +F+
Sbjct: 132 RKAELKSQGEKAVKRKDYLAASKIYTKALELDYFD 166


>01_07_0198 -
           41918276-41918408,41918486-41918841,41919091-41919237,
           41919666-41921789,41922150-41922344,41922488-41922568,
           41923325-41923414,41923507-41923593,41923914-41923961
          Length = 1086

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 50  KRLDSKAAKAVKLFDYLGCQVSLTKNQLVHW 80
           K +DS+ +K  K F++   +VS   N   HW
Sbjct: 762 KNMDSRYSKKNKKFEFNSTRVSPVPNGSSHW 792


>05_04_0126 + 18252594-18256922
          Length = 1442

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 60  VKLFDYLGCQVSLTKNQLVHWFNIWHV 86
           +KL D  GCQ  L KN L    +I H+
Sbjct: 843 LKLLDLEGCQYHLDKNHLKDICSILHL 869


>05_05_0335 - 24164714-24165574
          Length = 286

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 1  MNHASSVGGDVESISIISEREG 22
          M HA++VGGD   + +  E  G
Sbjct: 76 MRHAATVGGDEREVDVHDEHGG 97


>01_06_1522 - 37962431-37963060,37963216-37963542
          Length = 318

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 4   ASSVGGDVESISIISEREGVQARRDGDA 31
           A+  GG V SI+++ +R   +A  DG A
Sbjct: 200 AADAGGFVASIAMLQQRMAEEADADGSA 227


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,877,972
Number of Sequences: 37544
Number of extensions: 42018
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 6
length of query: 86
length of database: 14,793,348
effective HSP length: 65
effective length of query: 21
effective length of database: 12,352,988
effective search space: 259412748
effective search space used: 259412748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)