Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000739-TA|BGIBMGA000739-PA|undefined
         (170 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          27   0.11 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   0.77 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   1.3  
AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan oxyge...    23   1.8  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    23   1.8  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    23   1.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.1  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   4.1  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   5.4  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    20   9.5  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 26.6 bits (56), Expect = 0.11
 Identities = 8/33 (24%), Positives = 22/33 (66%)

Query: 112 IVSPDGGLNILPFSDVYSDVLAKHKQKMIKKRL 144
           +++PD GL++L  + ++ ++L  H ++ ++  L
Sbjct: 380 LLNPDLGLSLLQVAQIFKNLLENHYEEFVRYEL 412


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 7/45 (15%)

Query: 113 VSPDGGLNILPFSD-------VYSDVLAKHKQKMIKKRLERVLEE 150
           V P G LNI+P  D       ++ D   K   K++  ++ +VLEE
Sbjct: 178 VKPRGVLNIIPKQDNFRAIVSIFPDSARKPFFKLLTSKIYKVLEE 222


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 40  KTTNNTNFIPLPVPVPISQSIQIPQTVPVPYGLPLP 75
           K+ + T   P  V    +     P++V  P G+P P
Sbjct: 192 KSASRTTTSPTKVKASKASPAAAPRSVATPTGIPTP 227


>AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 126 DVYSDVLAKHKQKMIKKRLERVL 148
           +++SDVL + +   I KRL RV+
Sbjct: 17  NIFSDVLEESQTLEILKRLNRVV 39


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 126 DVYSDVLAKHKQKMIKKRLERVL 148
           +++SDVL + +   I KRL RV+
Sbjct: 77  NIFSDVLEESQTLEILKRLNRVV 99


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 126 DVYSDVLAKHKQKMIKKRLERVL 148
           +++SDVL + +   I KRL RV+
Sbjct: 77  NIFSDVLEESQTLEILKRLNRVV 99


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 21   PLYWYPKNLPDY 32
            PLY+YP ++ DY
Sbjct: 2528 PLYYYPGDVYDY 2539


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 18  PCNPLYWYPKNLPDYCY 34
           P +  Y YP  LP+Y Y
Sbjct: 273 PLSMYYQYPFGLPEYEY 289


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 39  IKTTNNTNFIPLPVPVPISQSIQIPQTV 66
           IK  + T F+  P PVP +    +  T+
Sbjct: 298 IKLHDKTPFLKRPYPVPFALRPAVDATI 325


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 54  VPISQSIQIPQTVPVP 69
           VP ++   +P T+P P
Sbjct: 201 VPPTEDCDVPSTIPPP 216


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.143    0.462 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,567
Number of Sequences: 317
Number of extensions: 2752
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 170
length of database: 114,650
effective HSP length: 53
effective length of query: 117
effective length of database: 97,849
effective search space: 11448333
effective search space used: 11448333
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)