Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000739-TA|BGIBMGA000739-PA|undefined
(170 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 37 0.002
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.007
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.010
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 32 0.039
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 32 0.052
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 31 0.12
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 28 0.64
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 1.1
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 1.1
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom... 27 1.1
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 27 1.1
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 27 2.0
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 26 2.6
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 25 4.5
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 4.5
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 25 4.5
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 6.0
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 25 6.0
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 25 6.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 7.9
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 36.7 bits (81), Expect = 0.002
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 37 PFIKTTNNTNFIPLPVPVP---------ISQSIQIPQTVPVPYGLPLPF-GVPLAPMGPM 86
P TT +PLP P+P +SQ +P + +P G+P PF G P P P
Sbjct: 492 PLPPTTFAPPGVPLP-PIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPG 550
Query: 87 LPVPIQP--SPYSFPRRQIGMVPGLPGIVSPDGGLN 120
+P P +P S+ + + PG+ P+G N
Sbjct: 551 IPGATAPPGAPGSYNTSESSNLNAPPGVSMPNGYSN 586
Score = 25.0 bits (52), Expect = 6.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 81 APMGPMLPVPIQPSPYSFPRRQIGMVPGLPGI 112
AP P P+ P+ ++ P + +PG PG+
Sbjct: 483 APFIPGTSAPLPPTTFAPPGVPLPPIPGAPGM 514
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.7 bits (76), Expect = 0.007
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 51 PVPVPISQSIQIPQTVPVPYGLPLPFGVPLA-PMGPMLPVPIQPSPYSFPRRQIGMVPGL 109
P +P+ P P PLP G+P A P+ P P P P+P P + + L
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP-PPAPAPAPAAPVASIAEL 494
Query: 110 PGIVSPDGGLNIL 122
P DG N++
Sbjct: 495 P---QQDGRANLM 504
Score = 30.3 bits (65), Expect = 0.16
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 51 PVPVPISQSIQIPQTVPVPYGLPLPFGVPLA-PMGPMLPVPIQPSPYSFP 99
PVP P S P ++P LP G P A P+ P P+ P P P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPI-APPLPAGMP 464
Score = 29.1 bits (62), Expect = 0.37
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 49 PLPVPVPISQSIQIPQTVPVPYGLPLPFGVPLAPMGPMLPVPIQPSPYSFPRRQIGMVPG 108
P P+P S I P +P PLP P P P P P P Q
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP-APAPAAPVASIAELPQQDGRAN 502
Query: 109 LPGIVSPDGGLNIL 122
L + GG+++L
Sbjct: 503 LMASIRASGGMDLL 516
Score = 27.1 bits (57), Expect = 1.5
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
Query: 37 PFIKTTNNTNFIPLPVP--VPISQSIQIPQTVP--VPYGLP----LPFGVPLAPMGPMLP 88
P + + T+ P+P P +P S +P + P +P G P LP P+A P LP
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA---PPLP 460
Query: 89 VPIQPSPYSFPRRQIGMVPGLPGIVSPDGGLNILPFSDVYSDVLA 133
+ +P P P +P + LP D ++++A
Sbjct: 461 AGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELPQQDGRANLMA 505
Score = 25.0 bits (52), Expect = 6.0
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 41 TTNNTNFIPLPVPVPISQSIQ-IPQ-TVPVPYGLPLP-----FGVPLAPMGPMLPVPIQP 93
T +T+ P+P +P S+ + +P + P P +P P P +P P+ PV + P
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNP 282
Query: 94 S 94
+
Sbjct: 283 A 283
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 34.3 bits (75), Expect = 0.010
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 49 PLPVPVPISQSIQIPQTVPVPYGLPLPFGVPLAPMGPMLPVPIQPSPYSFPRRQIGMVP- 107
P+P+P + I +P T P +P+P P P P P P P +I +P
Sbjct: 1023 PVPLPSADAPPIPVPSTAP---PVPIPTSTPPVPKSSS-GAPSAPPPVPAPSSEIPSIPA 1078
Query: 108 --GLPGIVSPDG 117
G P + +P G
Sbjct: 1079 PSGAPPVPAPSG 1090
Score = 34.3 bits (75), Expect = 0.010
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 37 PFIKTTNNTNFIPLPVPVPISQSIQIPQTVPVPYGLPLPFGVPLAPMGPMLPVPIQPSP 95
P K+++ P PVP P S+ IP P +P P G+P P P + P P P
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAP-PVPAPSGIPPVPK-PSVAAPPVPKP 1107
Score = 27.9 bits (59), Expect = 0.85
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 51 PVPVPISQSIQIPQ-TVPVPYGLPLPFGVPLAP----MGPMLPVPIQPSPYSFPRRQIGM 105
PVP P + +P+ +V VP +P P G P P P +PVP P P
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVP-PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Query: 106 VP---GLPGIVSP 115
VP G P + P
Sbjct: 1152 VPAPSGAPPVPKP 1164
Score = 25.4 bits (53), Expect = 4.5
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 51 PVPVPISQSIQIPQTVPVPYGLPLPFGVPLAPMGPMLPVPIQPSPYSFP 99
PVP P S +P+ +P P P P P + VP P P + P
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPK-PSVGVPPVPPPSTAP 1217
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 32.3 bits (70), Expect = 0.039
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 35 EKPFIKTTNNTNFIPLPVPVPISQSI-QIPQTVPVPYGLPLPFGVPLAPMGPMLP-VPIQ 92
++P + +P P P+ + +PQ VP +P VP P P++P VP
Sbjct: 621 QRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPV-VPEAPSVPQPPAAPVVPEVPSV 679
Query: 93 PSPYSFP 99
P P + P
Sbjct: 680 PQPPAVP 686
Score = 30.3 bits (65), Expect = 0.16
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 35 EKPFIKTTNNTNFIPLPVPVPISQSI-QIPQTVPVPYGLPLPFGVPLAPMGPMLP-VPIQ 92
++P + +P P P++ + +PQ PV +P VP P+ P+ P VP
Sbjct: 561 QRPAVPVVPEALSVPQPPVAPVAPEVPSVPQP-PVAPVVPEAPSVPQPPVAPVAPEVPSV 619
Query: 93 PSPYSFPRRQIGMVPGLPGIVSP 115
P R + +VP P + P
Sbjct: 620 PQ-----RPAVPVVPEAPSVPQP 637
Score = 29.9 bits (64), Expect = 0.21
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 48 IPLPVPVPISQSI-QIPQTVPVPYGLPLPFGVPLAPMGPMLP-VPIQPSPYSFPRRQIGM 105
+P P P++ + +PQ VP +P VP P P++P VP P R + +
Sbjct: 604 VPQPPVAPVAPEVPSVPQRPAVPV-VPEAPSVPQPPAAPVVPEVPSVPQ-----RPAVPV 657
Query: 106 VPGLPGIVSP 115
VP P + P
Sbjct: 658 VPEAPSVPQP 667
Score = 26.2 bits (55), Expect = 2.6
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 53 PVPISQSIQIPQTVPVPYGLPLPFGVPLAPMGPMLP-------VPIQPSPYSFPRRQIGM 105
P I+ S+ P PV P P AP+ P +P P+ P S P+R
Sbjct: 507 PSVITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRP--A 564
Query: 106 VPGLPGIVS 114
VP +P +S
Sbjct: 565 VPVVPEALS 573
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 31.9 bits (69), Expect = 0.052
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 41 TTNNTNF-IPLPVPVPISQSIQIPQTVPVPYGLPLPFGVPLAPMGPMLPVPIQPSPYSFP 99
T N+T+ LP P I +P P G+P+ +P++P VP+ P+ +
Sbjct: 273 TVNDTSMEYYLPNAYPHPTGISLP-FYPFDSGIPVSPNIPVSPSSSF--VPMYPTTFPSS 329
Query: 100 RRQIGMVPGLPGIVSP 115
+ QI P P SP
Sbjct: 330 KPQIVNAPPAPSYFSP 345
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 30.7 bits (66), Expect = 0.12
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 36 KPFIKTTNNTNFIPLPVPVPISQSIQIPQTVPVPYGLPLPFGVPLAPMGPMLPVPIQPSP 95
+P T + P P+ + Q P V P P +P+ P G M P+P+Q +
Sbjct: 1014 QPTGNITIQNAYFTAPQPMA-ADPFQSPLYVQPTGFQPPPSALPIQPTGYMQPIPVQATG 1072
Query: 96 YS-FPRRQIGMVPGLPGIV 113
Y + G+ P + G++
Sbjct: 1073 YQPLMVQPTGLQPHMTGVM 1091
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 28.3 bits (60), Expect = 0.64
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 14 NTENPCNPLYWYPKNLPDYCYEKPFIKTTNNTNFIPLPVPVPISQSIQIPQTVPVPYGLP 73
N + N + YP PD PF T + + P SQSI Q+ P PY P
Sbjct: 228 NVFDTLNVIDSYP-TAPDQVALPPFPDTNSTLTYTPSN-----SQSIYSSQSQPSPYSRP 281
Query: 74 LPFGVPLAPMGPMLPVPIQPSP 95
L L+ + P LP Q +P
Sbjct: 282 L-----LSSVHPNLPPGSQSTP 298
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 1.1
Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 49 PLPVPVPISQSIQIPQTVPVPYGLPLPFGVPLAPMGPMLPV-PIQPSPYSFPRRQIGMVP 107
P+ P P+ P + P P P VP P P +P P P P VP
Sbjct: 1686 PVSTP-PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Query: 108 GLPG 111
PG
Sbjct: 1745 N-PG 1747
Score = 25.0 bits (52), Expect = 6.0
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 53 PVPISQSIQIPQTVPVPYGLPLPFGVPLAPMGPMLPVPIQPS 94
P+ ++ + Q VP P P A M P P P+QPS
Sbjct: 1601 PLAMNAAGQPSLAVPAVPSAPSNHFNPFAKMQPPAPSPLQPS 1642
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 1.1
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 37 PFIKTTNNTNFIPLPVPVPISQSIQIPQTVPVPY-GLPL-PFGVPLAPMGPMLPVPIQPS 94
P + T + +P +P + + P +P +P+ P G PL P P V PS
Sbjct: 243 PLVGATTAVPPLSIPNVLPFTAAQHFPGMPAMPMMNVPMGPGGAPLVPPPPPGMVMASPS 302
Query: 95 PYSFPRRQIGMVPGLP 110
P + ++P +P
Sbjct: 303 PAAATIPGAPVMPNIP 318
>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 1.1
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 34 YEKPFIKTTNNTNFIPLPVPVPISQSI--------QIPQTVPVPYGLPLPFGVPLAPMGP 85
YEK + LP PVPIS+ + Q P + GL PF +P+ P
Sbjct: 86 YEKILTPIPDEDFINALPNPVPISEFLEDARRHLKQYPNALIGEIGLDKPFRLPVGPYDA 145
Query: 86 MLPVPIQP-SPY 96
+P P SP+
Sbjct: 146 RSSLPQGPLSPF 157
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 88 PVPIQPSPYSFPRRQIG-------MVPGLPGIVSPDGGL 119
P P+QP+PY P +Q M P P P GGL
Sbjct: 115 PQPVQPNPYGAPYQQAPPAGAPYYMYPNAPAQFVPPGGL 153
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 26.6 bits (56), Expect = 2.0
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 74 LPFGVPLAPMGPMLPVPIQPSPYSFPRRQIG---MVPGLPGIVSP 115
LP PLAP+G P P P +S P + G M P + + SP
Sbjct: 90 LPRLNPLAPIGARQPNPSIPQQFSKPINESGTGTMGPAVGELTSP 134
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 2.6
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 102 QIGMVPGLPGIVSPDGGLNILPFSDVYSDVL-AKHKQKMIKK 142
Q G G PG P GG PF D++ ++ + +Q +++
Sbjct: 79 QPGGPGGGPGEGFPGGGFGFDPFGDIFDNIFGGRRRQNAVRR 120
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 79 PLAPMGPMLPVPIQPSPYSFPRRQIGMVPGLP 110
P + + + PVP +PS S PR+++ + LP
Sbjct: 145 PYSSVAALTPVPKKPSKPSKPRKKVPVSHPLP 176
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 4.5
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 44 NTNFIP---LPVPVPISQSIQIPQTVPVP-------YGLPLPFGVPLAPMGPMLPVPIQP 93
NT +P +P +P S P TVP+P Y P G P+ + P +P QP
Sbjct: 129 NTASLPNAGIPAAMPGMPS-GYPGTVPIPQGGYNAHYSSPYNNGYPIGAVNPTSAIPAQP 187
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 4.5
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 70 YGLPLPFGVPLAPMGPMLPVPIQPSPYSFPRRQIGMVPGLPGIVSPDGGLNILPFSDVYS 129
Y L P+ PM P+ P +PSP S P+ V G P P ++ + +SD
Sbjct: 306 YPLSRSVSTPV-PMSPISISPAKPSPQS-PKLSQSAV-GHPSSSIPAAAMHKVSYSDDLM 362
Query: 130 DVLAKHK 136
+A+ K
Sbjct: 363 RFVAREK 369
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 6.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 40 KTTNNTNFIPLPVPVPISQSIQIPQTV 66
K +NT I P P+P S S P T+
Sbjct: 260 KDQSNTPVIKAPAPIPFSVSSDPPSTM 286
Score = 24.6 bits (51), Expect = 7.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 85 PMLPVPIQPSPYSFPRRQIGMVP 107
P P P+ P+P+S PR + +P
Sbjct: 454 PSYPYPMFPAPFSPPRNAMMPIP 476
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 6.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 12 IGNTENPCNPLYWYPKNLPDY 32
+GN + NPLY +P+ L Y
Sbjct: 172 VGNVSSISNPLYSFPRTLLPY 192
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 6.0
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 116 DGGLNILP--FSDVYSDVLAKHKQKMIKKRLERVLEEYDDPP 155
D L++ P FS+ S++ K KQ++I LE DPP
Sbjct: 361 DSFLSVSPPAFSEYTSELQKKSKQELIDPTLEGPRWTVSDPP 402
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 24.6 bits (51), Expect = 7.9
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 49 PLPVPVPISQSIQIPQTVPVPYGLPLPFGVPLAPMGPML----PVPIQPSP 95
P P P + P +PVP P+ G P P P + P P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.143 0.462
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 976,946
Number of Sequences: 5004
Number of extensions: 49506
Number of successful extensions: 201
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 45
length of query: 170
length of database: 2,362,478
effective HSP length: 68
effective length of query: 102
effective length of database: 2,022,206
effective search space: 206265012
effective search space used: 206265012
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)
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