Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000738-TA|BGIBMGA000738-PA|undefined
         (195 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   3.4  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 165 HISVGAKFQRYHTKSLISRKYSNLG 189
           HISV  K Q+    S+I  +Y+N G
Sbjct: 162 HISVAQKLQKEIPNSIILDQYTNPG 186


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
          factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 4  QSIDRESLAARLVDATLATVRLPFYEMWDDV 34
          Q+I  E     L+D       LP  E+WD +
Sbjct: 32 QTIFNEDKLDNLMDKQFKNKSLPVIEIWDQM 62


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.133    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,893
Number of Sequences: 429
Number of extensions: 1027
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 195
length of database: 140,377
effective HSP length: 54
effective length of query: 141
effective length of database: 117,211
effective search space: 16526751
effective search space used: 16526751
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)