GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000738-TA|BGIBMGA000738-PA|undefined
         (195 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0140 + 16572497-16572528,16572958-16573063,16573509-165735...    27   10.0 

>01_04_0140 +
           16572497-16572528,16572958-16573063,16573509-16573567,
           16573615-16573681,16573964-16573989,16574787-16574913,
           16576542-16576609,16577223-16577329,16577837-16577902,
           16579332-16579438
          Length = 254

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 137 ERALRTYLANRPITYTQKSKNQDQSLLHHISVGAKFQ 173
           E  LR YL  RP   +Q+S++   + +HH +V   FQ
Sbjct: 94  EENLRKYL--RPCLVSQESRSWSHANMHHANVVLSFQ 128


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.133    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,670,476
Number of Sequences: 37544
Number of extensions: 97133
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 1
length of query: 195
length of database: 14,793,348
effective HSP length: 78
effective length of query: 117
effective length of database: 11,864,916
effective search space: 1388195172
effective search space used: 1388195172
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)