GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000738-TA|BGIBMGA000738-PA|undefined
         (195 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15393| Best HMM Match : Peptidase_M16_C (HMM E-Value=6.6e-05)       31   0.83 
SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  

>SB_15393| Best HMM Match : Peptidase_M16_C (HMM E-Value=6.6e-05)
          Length = 683

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 120 RRNKGQRVEPPRAQTWGERALRTYLANRPITYTQKSKNQDQSLLHHISVGAKFQRYHTKS 179
           R +K +++     + WGE   R Y  +R  TY+ +   Q+++ L  ISV  +      ++
Sbjct: 515 RLDKPKKLRTETQKHWGEILTRQYNFDRACTYSGRGDLQERTTLASISVSLRNAHNQVQT 574

Query: 180 LISRK 184
           L S +
Sbjct: 575 LDSNE 579


>SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 122 NKGQRVEPPRAQTWGERALRTYLANRPITYTQKSKNQD 159
           N  ++ EP      G+  L T  AN+P+ +T ++KN D
Sbjct: 672 NSRKKTEPANCTVSGD-GLTTGAANQPVKFTVRTKNPD 708


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.133    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,355,535
Number of Sequences: 59808
Number of extensions: 117361
Number of successful extensions: 248
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 2
length of query: 195
length of database: 16,821,457
effective HSP length: 78
effective length of query: 117
effective length of database: 12,156,433
effective search space: 1422302661
effective search space used: 1422302661
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)