GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000738-TA|BGIBMGA000738-PA|undefined
         (195 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03040.1 68418.m00252 calmodulin-binding family protein simil...    28   4.8  
At5g43700.1 68418.m05342 auxin-responsive protein / indoleacetic...    27   8.4  

>At5g03040.1 68418.m00252 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 291

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 130 PRAQTWGERALRTYLANRPITYTQKSKNQDQ 160
           P   TWG   L  ++A RP+  ++K + Q Q
Sbjct: 260 PSNPTWGWSWLERWMAGRPLESSEKEQKQQQ 290


>At5g43700.1 68418.m05342 auxin-responsive protein / indoleacetic
           acid-induced protein 4 (IAA4) / auxin-induced protein
           (AUX2-11) identical to SP|P33077 Auxin-responsive
           protein IAA4 (Indoleacetic acid-induced protein 4)
           (Auxin-induced protein AUX2-11) {Arabidopsis thaliana}
          Length = 186

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 118 LDRRNKGQRVEPPRAQTWGERALRTYLANRPITYTQKSKNQDQSLLHHISV-GAKFQR 174
           ++   K +   PP+AQ  G   +R+Y  N     T+KS+++ Q     +S+ GA + R
Sbjct: 47  IESTGKTETASPPKAQIVGWPPVRSYRKNN--VQTKKSESEGQGNYVKVSMDGAPYLR 102


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.133    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,974,343
Number of Sequences: 28952
Number of extensions: 80410
Number of successful extensions: 149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 148
Number of HSP's gapped (non-prelim): 2
length of query: 195
length of database: 12,070,560
effective HSP length: 77
effective length of query: 118
effective length of database: 9,841,256
effective search space: 1161268208
effective search space used: 1161268208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)