Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000736-TA|BGIBMGA000736-PA|undefined
         (99 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    27   0.40 
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    27   0.53 
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   0.70 
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   0.93 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   1.6  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   2.8  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    24   3.7  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    24   3.7  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    24   4.9  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    24   4.9  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    23   8.6  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    23   8.6  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    23   8.6  

>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 0.40
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 40  EPERESIRADVDNRIKSALHDMETP-NDELFDFRGARAQRGRPLSSALEDDEFNE 93
           E + + +R ++D R+ + + D+ TP N  +FD +    Q  R     L  + FNE
Sbjct: 224 EGDSKFVRVNLDTRLDNRVLDLRTPTNQAIFDIQAGICQAFREF---LLSNSFNE 275


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 0.53
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 4   VGRTRRTRVYDCNYNKGESYYRPVLDRLDGKAPIVR-----EPERESIRA-DVDNRIKSA 57
           V  T ++RV +      +  Y    D LD   P+       +PE  S  A D    I   
Sbjct: 401 VPETDKSRVLNLLAMAEDDEYDDTYDDLDTTGPVDSGVGDDDPEASSKDAHDFQKFINQT 460

Query: 58  LHDMETPNDELFDFRGARAQRGRPLSSALEDDEFNE 93
           L+D    N E+FD +  +++    L + L++   +E
Sbjct: 461 LYDFYQQNPEVFDQKARKSKERADLLAKLDNSLTHE 496


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 26.6 bits (56), Expect = 0.70
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 20  GESYYRPVLDRLDGKAPIVREPERE--SIRADVDNRIKSALHDMETPNDE 67
           G ++ R    R      +V EP     S   D  + + S+L+D ++PND+
Sbjct: 271 GSNFSRATSSRSSKTRSVVYEPNHRHTSFFGDTLSNLSSSLNDKKSPNDD 320


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 0.93
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 17  YNKGESYYRPV----LDRLDGKAPIVREPERESIRADVDN 52
           Y   ++YY  +    LDR+   +  V E   +S++ D+DN
Sbjct: 377 YGSADTYYERITQILLDRISSLSESVNEQNIKSLQTDIDN 416


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 8    RRTRVYDCNYNKGESYYRPVLDRLDGKAPIVREPERESIRADVDNRIKSALHDMETPN 65
            +R +  D N + GE   +  +      A +  EP+ ES+    + +     +D+ T N
Sbjct: 951  KRQKTADVNDDVGEEEVKQSVSEQVDSAQLTSEPKSESLPKSPEEKSDDTSNDVTTEN 1008


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 15/51 (29%), Positives = 19/51 (37%)

Query: 44  ESIRADVDNRIKSALHDMETPNDELFDFRGARAQRGRPLSSALEDDEFNED 94
           +    D D  + S LH  +   D    F        R  SSA  DD F +D
Sbjct: 179 DDFEIDPDTDLNSILHRKQNRMDPKASFSSVEQSSLRTPSSAHNDDGFWDD 229


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 65  NDELFDFRGARAQRGRPLSSALEDDEFNE 93
           +D+ FD++  + ++G+      EDDE  E
Sbjct: 96  DDDEFDYKPKKGKKGKKSKKVEEDDEPQE 124


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 43  RESIRADVDN--RIKSALHDMETPNDELFDFRGARAQRGRPL 82
           + S+R + +N  +I S+ HD+   N+   +    R + G P+
Sbjct: 519 KHSLRDNSENAPQILSSFHDLSLQNESFDEMFNGRYENGSPI 560


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 34  KAPIVREPERESIRADVDNRIKSALHDMETPNDELFDF 71
           K P  +EP  +S + D D   K +   +E  N++   F
Sbjct: 151 KKPEAKEPSPKSRKTDEDKHDKDSNEKIEDVNEKTIKF 188


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 39  REPER-ESIRADVDNRIKSALHDMETPNDELFDFRGARAQRGRPLSSALEDDEFNEDA 95
           RE E+ + IR   +  I++A  D    N++     G+     +P  SA+ +D F+ED+
Sbjct: 497 REREKSKGIRGQEEEFIENADED----NNDSSSSSGSVVSAVKPRRSAVSNDRFSEDS 550


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 29  DRLDGKAPIVREPERESIRADVDNRIKSALHDMETPND 66
           D  D K P V  P  E+I +D+D+       + E  +D
Sbjct: 284 DNEDEKKPPVDTPSDEAINSDLDDPDSDEAPETEEGSD 321


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 53  RIKSALHDMETPNDELFDFRGARAQRGRPLSSALEDDEFNED 94
           R K  L+ +E     LF        +GRP++  L  D+F+ D
Sbjct: 148 RQKFLLYLLEKYQINLFHREERLTDQGRPVAFELPPDKFHSD 189


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 21  ESYYRPVLDRLDGKAPIVREPERESIRADVDN 52
           E+  R  +  +    P+++E ++E  R D DN
Sbjct: 306 ENSIRKKIQTIKNLIPVLQEMDKEHARIDFDN 337


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.136    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 460,860
Number of Sequences: 5004
Number of extensions: 17337
Number of successful extensions: 43
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 14
length of query: 99
length of database: 2,362,478
effective HSP length: 63
effective length of query: 36
effective length of database: 2,047,226
effective search space: 73700136
effective search space used: 73700136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)