Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000736-TA|BGIBMGA000736-PA|undefined
         (99 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   0.53 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   0.92 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   1.6  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    20   6.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   6.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    19   8.6  

>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
          determiner protein.
          Length = 180

 Score = 23.4 bits (48), Expect = 0.53
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 6  RTRRTRVYDCNYNKGESYYRPVLDRLDGKAPIVREPERESIRADVDNRIKSALHDMETPN 65
          R  R+R  + N  K E  YR   +R   ++   RE ER   R  + +   + + ++   N
Sbjct: 38 RYSRSREREQNSYKNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNNYISNISNYN 97

Query: 66 DE 67
          ++
Sbjct: 98 ND 99


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
          determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 0.92
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 6  RTRRTRVYDCNYNKGESYYRPVLDRLDGKAPIVREPERESIRADVDNRIKSALHDMETPN 65
          R  R+R  + N  K E  YR   +R   ++   RE ER   R  + +   + + ++   N
Sbjct: 38 RYSRSREREQNSYKNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNNYISNISNYN 97

Query: 66 D 66
          +
Sbjct: 98 N 98


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 40  EPERESIRADVDNRIKSALHDMETPNDEL 68
           EPE E  +  V        H  E PNDE+
Sbjct: 297 EPEIEISQNSVSTGSDKENHKTEEPNDEV 325


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
          protein.
          Length = 208

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 7  TRRTRVYDCNYN 18
          TR+TR+ D  YN
Sbjct: 73 TRKTRIIDVVYN 84


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 31  LDG-KAPIVREPERESIRADVDNR 53
           L+G K   ++E   E++RA VDNR
Sbjct: 492 LEGWKVEKIQEIYLEALRAYVDNR 515


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 14/65 (21%), Positives = 26/65 (40%)

Query: 6   RTRRTRVYDCNYNKGESYYRPVLDRLDGKAPIVREPERESIRADVDNRIKSALHDMETPN 65
           R  R+R  + N  K E  YR   +R   ++    E ER      + +     +H+    N
Sbjct: 271 RYSRSREREQNSYKNEREYRKYRERSKERSRDRTERERSREPKIISSLSNKTIHNNNNYN 330

Query: 66  DELFD 70
           +  ++
Sbjct: 331 NNNYN 335


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,446
Number of Sequences: 429
Number of extensions: 1205
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 99
length of database: 140,377
effective HSP length: 49
effective length of query: 50
effective length of database: 119,356
effective search space:  5967800
effective search space used:  5967800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)