Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000736-TA|BGIBMGA000736-PA|undefined
         (99 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05810.1 68418.m00639 zinc finger (C3HC4-type RING finger) fa...    28   1.2  
At1g22510.1 68414.m02812 zinc finger (C3HC4-type RING finger) fa...    26   3.7  
At5g60440.1 68418.m07581 MADS-box protein (AGL62) contains Pfal ...    25   6.4  
At2g43420.1 68415.m05396 3-beta hydroxysteroid dehydrogenase/iso...    25   6.4  
At2g39580.1 68415.m04855 expressed protein                             25   6.4  
At1g27070.1 68414.m03300 5'-AMP-activated protein kinase-related...    25   6.4  
At3g63150.1 68416.m07092 GTP-binding protein-related low similar...    25   8.5  
At1g50990.1 68414.m05732 protein kinase-related low similarity t...    25   8.5  

>At5g05810.1 68418.m00639 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 353

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/44 (36%), Positives = 21/44 (47%)

Query: 11  RVYDCNYNKGESYYRPVLDRLDGKAPIVREPERESIRADVDNRI 54
           +V D    K ES     LDRL  K  ++  P RES     ++RI
Sbjct: 219 KVNDAGEEKSESVAVNCLDRLQRKDGLLLIPNRESFEGRFEHRI 262


>At1g22510.1 68414.m02812 zinc finger (C3HC4-type RING finger)
          family protein contains Pfam profile: PF00097 zinc
          finger, C3HC4 type (RING finger)
          Length = 185

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 41 PERESIRADVDNRIKSALHDMETPN 65
          P  E++R+  D  +   LHD+ET N
Sbjct: 61 PSEETVRSRNDATVSEVLHDVETYN 85


>At5g60440.1 68418.m07581 MADS-box protein (AGL62) contains Pfal
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain)
          Length = 299

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 38  VREPERESIRADVDNRIKSALHDMETPNDELFDFRGARAQRGRPLSSALED 88
           +RE  R SI  D++N +   L  +ET   +  + +  R ++ + L +  ED
Sbjct: 90  LRETRRNSIVQDLNNHLTQVLSQLETEKKKYDELKKIR-EKTKALGNWWED 139


>At2g43420.1 68415.m05396 3-beta hydroxysteroid
           dehydrogenase/isomerase family protein contains Pfam
           profile PF01073 3-beta hydroxysteroid
           dehydrogenase/isomerase domain; similar to
           NAD(P)-dependent steroid dehydrogenase from Homo sapiens
           [SP|Q15738], Mus musculus [SP|Q9R1J0]
          Length = 561

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 10  TRVYDCNYNKGESYYRPVLDRLDGKAPIVREPERESIRADVDNRIKS 56
           TR ++CN  K    Y PV+   DG A  ++   R+  ++D D  I+S
Sbjct: 323 TRTFNCNAAKKHLGYTPVVTLEDGIASTLQWFSRDLEKSD-DTIIQS 368


>At2g39580.1 68415.m04855 expressed protein
          Length = 1567

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 13   YDCNYNKGESYYRPVLDRLDGKAPIVREPERESIRADVDNRIKSALHDMETPNDEL 68
            YD        +Y  V D L  K   VR  E E      DN ++SAL D+   +D++
Sbjct: 1247 YDLARELMSRWYGSVWDVLSHKYKTVRGNEEEGD----DNMLESALSDLNVASDQV 1298


>At1g27070.1 68414.m03300 5'-AMP-activated protein kinase-related
           contains weak similarity to Swiss-Prot:Q9QZH4
           5'-AMP-activated protein kinase, beta-2 subunit (AMPK
           beta-2 chain) [Rattus norvegicus]
          Length = 532

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/69 (18%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 29  DRLDGKAPIVREPERESIRADVDNRIKSALHDMETPNDELFDFRGARAQRGRPLSSALED 88
           DR+   +  V +   +     + + + S LH + +P D++   + +    G  L +  +D
Sbjct: 337 DRIASSSEDVNKTHIKHRLQQLQSELSSVLHSLRSPPDKVVTSKDSETTAGN-LENLSDD 395

Query: 89  DEFNEDAMV 97
            E+ E+ ++
Sbjct: 396 WEYKENEII 404


>At3g63150.1 68416.m07092 GTP-binding protein-related low similarity
           to SP|Q38912 RAC-like GTP binding protein ARAC3
           (GTP-binding protein ROP6) {Arabidopsis thaliana};
           contains Pfam profile PF00036: EF hand (domain)
          Length = 643

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 22  SYYRPVLDRLDGKAPIVREPERESIRADVDNRIKSALHDMETP 64
           SY+ P L RL+ KAP++    +  +R   D R  + L D+ +P
Sbjct: 105 SYWLPELRRLEIKAPVIVVGCKLDLR---DERSPARLEDIMSP 144


>At1g50990.1 68414.m05732 protein kinase-related low similarity to
          SP|Q06548|APKA_ARATH Protein kinase APK1A Arabidopsis
          thaliana; contains Pfam profile: PF00069: Eukaryotic
          protein kinase domain; contains non-consensus (GC)
          splice site at intron 6
          Length = 507

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 56 SALHDMETPNDELFDFRGARAQRG 79
          S+LHD +  +D+L   RG  A+RG
Sbjct: 12 SSLHDKKITSDDLSGRRGKGAKRG 35


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.136    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,122
Number of Sequences: 28952
Number of extensions: 89288
Number of successful extensions: 199
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 195
Number of HSP's gapped (non-prelim): 8
length of query: 99
length of database: 12,070,560
effective HSP length: 70
effective length of query: 29
effective length of database: 10,043,920
effective search space: 291273680
effective search space used: 291273680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)