GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000736-TA|BGIBMGA000736-PA|undefined
         (99 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)               29   0.47 
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)               29   0.47 
SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.63 
SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)                 29   0.83 
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.4  
SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.9  
SB_36933| Best HMM Match : TNFR_c6 (HMM E-Value=0.93)                  27   1.9  
SB_8603| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   1.9  
SB_48008| Best HMM Match : M (HMM E-Value=0.0068)                      27   1.9  
SB_8966| Best HMM Match : SAP (HMM E-Value=1.6e-08)                    27   1.9  
SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)                       27   3.3  
SB_32719| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.8  
SB_15300| Best HMM Match : HemolysinCabind (HMM E-Value=8.9)           25   7.7  

>SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)
          Length = 478

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 38  VREPERESIRADVDNRIKSALHDMETPNDELFDFRGARAQRGRPLSSALED 88
           V+E  R S+   V+     AL DM    ++L     AR Q+ + L + LED
Sbjct: 72  VKESRRRSVEVQVEIDDDQALQDMHDKLEKLDHMLQARGQQCQELKTRLED 122


>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
          Length = 834

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 38  VREPERESIRADVDNRIKSALHDMETPNDELFDFRGARAQRGRPLSSALED 88
           V+E  R S+   V+     AL DM    ++L     AR Q+ + L + LED
Sbjct: 632 VKESRRRSVEVQVEIDDDQALQDMHDKLEKLDHMLQARGQQCQELKTRLED 682


>SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 17  YNKGES-YYRPVLDRLDGKAPIVREPERESIRADVDNRIKSALHDMETP 64
           YN  ++ YYR  L   D   PI+R   R+  RA +D    + LH  E P
Sbjct: 679 YNAQDTIYYRAALKLRDQGRPIIRAARRQIERAGIDP--VTGLHTKEAP 725


>SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 1127

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 17/55 (30%), Positives = 25/55 (45%)

Query: 27  VLDRLDGKAPIVREPERESIRADVDNRIKSALHDMETPNDELFDFRGARAQRGRP 81
           +L RL G  P V++ + E     +DN  ++        N E  DF   R+  GRP
Sbjct: 352 MLRRLIGVVPHVKKEDLEYFAEVIDNLNRTPKFRASPWNQEYRDFLAERSSTGRP 406


>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3306

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 28  LDRLDGKAP-IVREPERESIRAD-VDNRIKSALHDMETP-NDELFDFRGARAQRGRPLSS 84
           LD LDG +  I R  +  + R D V   +++  H +E+  ND       A A     L S
Sbjct: 529 LDELDGDSSGIKRIQDTANDRYDKVKRDLENKKHHLESDQNDRFIRALDAVATEINKLDS 588

Query: 85  ALEDDEFNED 94
            + DD  NED
Sbjct: 589 EIPDDRLNED 598


>SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1061

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 32   DGKAPIVREPERESIRADVDNRIKSALHDMETPNDELFDFRGARAQRGRPLSSALEDDE 90
            D +AP      +  I +D D+ +   L D +  ND+  + +    +R R L+S+ E DE
Sbjct: 1004 DAEAP--SSSRKRVISSDDDDELDEKLDDDDDNNDDEEESKPTPKKRVRQLASSSESDE 1060


>SB_36933| Best HMM Match : TNFR_c6 (HMM E-Value=0.93)
          Length = 524

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 31  LDGKAPIVREPERESIRADVDNRIKSALHDMETPNDELFDFRGARAQRGRPLSSALE 87
           LDG A   R  + + I   V  R+  AL+D ++   +L D +  + + GR   +A+E
Sbjct: 297 LDGSANCNRVVKLDCI-GHVQKRMGKALYDFQSATTKLADGKPVKERSGRLTKTAIE 352


>SB_8603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 51 DNRIKSALHDMETPNDELFDFR 72
          +N+IK+  HD E  ND L DFR
Sbjct: 25 NNKIKTQNHDDEEKNDPLNDFR 46


>SB_48008| Best HMM Match : M (HMM E-Value=0.0068)
          Length = 1068

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 32 DGKAPI-VREPERESIRADVDNRIKSALHDMETPNDEL 68
          D KA + +R+   ES+ A V N++  A++D+E  N+EL
Sbjct: 20 DHKAQLQIRDQNIESLTASV-NKLSLAVNDLEMENEEL 56


>SB_8966| Best HMM Match : SAP (HMM E-Value=1.6e-08)
          Length = 696

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 51 DNRIKSALHDMETPNDELFDFR 72
          +N+IK+  HD E  ND L DFR
Sbjct: 50 NNKIKTQNHDDEEKNDPLNDFR 71


>SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 10  TRVYDCNYNKGESYY-RPVLDRLDGKAPIVREPERESIRADVDNRIKSALHDMETPNDEL 68
           ++ ++ ++++ +S++ +P L  +D KAP V    ++  +            D+E P    
Sbjct: 468 SKPHESDHSQNKSHHIKPALP-MDNKAPYVHPNTKQQFQGKPGGEAAREKKDLEKPKRRQ 526

Query: 69  FDFRGARAQRGRPLSSALEDDEFNEDAMV 97
            + R   A+       A   DE ++D  V
Sbjct: 527 RNRRARSAEVSSGTKEAKPSDEGSQDNKV 555


>SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)
          Length = 352

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/32 (34%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 38  VREPERESIRADVDNRIKSALHDMETPNDELF 69
           +++ E+E+ +A++D  ++ A +D E P D+LF
Sbjct: 296 IKKIEQEA-KAEIDEAVECAKNDPEPPLDDLF 326


>SB_32719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/43 (23%), Positives = 22/43 (51%)

Query: 14  DCNYNKGESYYRPVLDRLDGKAPIVREPERESIRADVDNRIKS 56
           D  Y+      R  L+R +   P++R  ER  + +++  +++S
Sbjct: 88  DDRYDNEIEKMRSPLERTEKMLPVIRSKERSFVSSNIKEKVES 130


>SB_15300| Best HMM Match : HemolysinCabind (HMM E-Value=8.9)
          Length = 159

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/41 (26%), Positives = 23/41 (56%)

Query: 28  LDRLDGKAPIVREPERESIRADVDNRIKSALHDMETPNDEL 68
           +D LD   P  ++ +++ I  DV+   K+  +  E+ +DE+
Sbjct: 85  MDELDFSLPTKKKKKKKKIAIDVEAEAKAIENGTESGDDEV 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.136    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,444,059
Number of Sequences: 59808
Number of extensions: 133344
Number of successful extensions: 336
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 323
Number of HSP's gapped (non-prelim): 16
length of query: 99
length of database: 16,821,457
effective HSP length: 71
effective length of query: 28
effective length of database: 12,575,089
effective search space: 352102492
effective search space used: 352102492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)