Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000735-TA|BGIBMGA000735-PA|undefined
         (293 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25569| Best HMM Match : DUF600 (HMM E-Value=1.3)                    29   4.5  
SB_56434| Best HMM Match : DUF1225 (HMM E-Value=0.22)                  29   5.9  
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)               29   5.9  
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)            29   5.9  
SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)                    28   7.8  

>SB_25569| Best HMM Match : DUF600 (HMM E-Value=1.3)
          Length = 271

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 117 YNTILGTVDKAVYQNVDAATLKFDTAYVELQKVVEQ 152
           Y TI+  V K  Y  +D    +FD+ Y E ++ +EQ
Sbjct: 91  YTTIVSNVKKKAYDLLDHRKGEFDSDYEEFKESIEQ 126


>SB_56434| Best HMM Match : DUF1225 (HMM E-Value=0.22)
          Length = 387

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 119 TILGTVDKAVYQNVDAATLKFDTAYVELQKVVEQAMEIPVIEIREDIAELLYNSYKMFEL 178
           +IL + +K +Y+ VD+  ++ DT   +L ++ ++ +E   I+   ++   + N+Y+    
Sbjct: 109 SILSSFNKTLYERVDSLKIEKDTIQKDLIELFKKELE---IKTNAELVNTIANNYQNLWF 165

Query: 179 NIME 182
           N  E
Sbjct: 166 NNWE 169


>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
          Length = 1341

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/74 (22%), Positives = 37/74 (50%)

Query: 220 SKCLLISIQDRFGIYLPRETSFSNKNVTATPNISLEDVSEDVGVDSERADTKSLVSRKSA 279
           S C+L+  ++     + R+TSF +   TA P ++  ++ E +  D ++ D  S  S+   
Sbjct: 135 SFCVLLYSRETIAQSIRRQTSFLHLAQTARPVLNSAELLEQMICDLDKVDNSSAGSQTLY 194

Query: 280 VSTKSNVSKLKEKE 293
             T++   +  ++E
Sbjct: 195 DKTENETDEGLDRE 208


>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
          Length = 642

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 212 GMPNNVACSKCLLISIQDRFGIYLPRETSFSNKNVTATPNISLEDVSEDV-GVDSERADT 270
           G PNN AC      S   R   +      F NK  T T +ISL+ V E+V   D E +  
Sbjct: 522 GKPNNDACLPGTRNSKLPR-STHTWSAGIFKNKMATRTDSISLDQVLEEVCAEDGEISSE 580

Query: 271 KSLVSRKSAV 280
           + + S + AV
Sbjct: 581 EEVPSLEEAV 590


>SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)
          Length = 1675

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 20/65 (30%), Positives = 29/65 (44%)

Query: 122 GTVDKAVYQNVDAATLKFDTAYVELQKVVEQAMEIPVIEIREDIAELLYNSYKMFELNIM 181
           G  D  V + V  AT   +    E+ K     ME P +EI  ++ ELL N      L+I+
Sbjct: 389 GQADINVMEGVPDATSGPEMMGAEMDKPFRVWMEYPKVEIVTEMYELLSNDSNTDALSIL 448

Query: 182 EKERI 186
            +  I
Sbjct: 449 TESLI 453


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.131    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,957,704
Number of Sequences: 59808
Number of extensions: 222843
Number of successful extensions: 677
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 674
Number of HSP's gapped (non-prelim): 5
length of query: 293
length of database: 16,821,457
effective HSP length: 82
effective length of query: 211
effective length of database: 11,917,201
effective search space: 2514529411
effective search space used: 2514529411
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)