Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000735-TA|BGIBMGA000735-PA|undefined
         (293 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009671-1|AAH09671.1|  314|Homo sapiens family with sequence si...    32   2.1  
AF151848-1|AAD34085.1|  314|Homo sapiens CGI-90 protein protein.       32   2.1  

>BC009671-1|AAH09671.1|  314|Homo sapiens family with sequence
           similarity 82, member B protein.
          Length = 314

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 12  QSKKKDILKEAAQYFTRTVDELECEIKEFLGLPVDASDIKDYE-LKSDLQN--IIREHY 67
           + +KK ++ EA +Y  R +++ E          +  SD+ DYE +K+ + N  II+EH+
Sbjct: 136 EEEKKLLVYEALEYAKRALEKNESSFASHKWYAICLSDVGDYEGIKAKIANAYIIKEHF 194


>AF151848-1|AAD34085.1|  314|Homo sapiens CGI-90 protein protein.
          Length = 314

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 12  QSKKKDILKEAAQYFTRTVDELECEIKEFLGLPVDASDIKDYE-LKSDLQN--IIREHY 67
           + +KK ++ EA +Y  R +++ E          +  SD+ DYE +K+ + N  II+EH+
Sbjct: 136 EEEKKLLVYEALEYAKRALEKNESSFASHKWYAICLSDVGDYEGIKAKIANAYIIKEHF 194


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.316    0.131    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,034,819
Number of Sequences: 224733
Number of extensions: 906373
Number of successful extensions: 2353
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2353
Number of HSP's gapped (non-prelim): 2
length of query: 293
length of database: 73,234,838
effective HSP length: 89
effective length of query: 204
effective length of database: 53,233,601
effective search space: 10859654604
effective search space used: 10859654604
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)