Silkworm BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000735-TA|BGIBMGA000735-PA|undefined
         (293 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY121694-1|AAM52021.1|  468|Drosophila melanogaster RE63354p pro...    29   5.8  
AE014296-2138|AAF49920.1|  468|Drosophila melanogaster CG4237-PA...    29   5.8  
BT021418-1|AAX33566.1|  901|Drosophila melanogaster LD04461p pro...    29   7.6  
AF011427-1|AAB64300.1|  468|Drosophila melanogaster putative ARF...    29   7.6  
AE014298-1652|AAF48069.1|  901|Drosophila melanogaster CG1703-PA...    29   7.6  

>AY121694-1|AAM52021.1|  468|Drosophila melanogaster RE63354p
           protein.
          Length = 468

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 234 YLPRETSFSNKNV---TATPNISLEDVSEDVGVDSERADTKSLVSRKSAVSTKSN 285
           Y   ETS+ N +    TA  N+ L+D S+ +    E  D KS V  K+A ++ +N
Sbjct: 401 YQSSETSYQNASSGGSTARRNMKLQDTSQKLSEGFESLDVKS-VKPKTATASSAN 454


>AE014296-2138|AAF49920.1|  468|Drosophila melanogaster CG4237-PA
           protein.
          Length = 468

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 234 YLPRETSFSNKNV---TATPNISLEDVSEDVGVDSERADTKSLVSRKSAVSTKSN 285
           Y   ETS+ N +    TA  N+ L+D S+ +    E  D KS V  K+A ++ +N
Sbjct: 401 YQSSETSYQNASSGGSTARRNMKLQDTSQKLSEGFESLDVKS-VKPKTATASSAN 454


>BT021418-1|AAX33566.1|  901|Drosophila melanogaster LD04461p
           protein.
          Length = 901

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 244 KNVTATPNISLEDVSEDVGVDSERADTKSLVSRKSAVSTKSNVSKLKEKE 293
           KN+ A  +   ++V++D+  DSE  + K  +S K+A  +K    K  EKE
Sbjct: 184 KNMFAMSDDEEDEVADDLPNDSEE-EEKEQLSNKAAKESKKEQQKQPEKE 232


>AF011427-1|AAB64300.1|  468|Drosophila melanogaster putative ARF1
           GTPase activatingprotein protein.
          Length = 468

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 234 YLPRETSFSNK---NVTATPNISLEDVSEDVGVDSERADTKSLVSRKSAVSTKSN 285
           Y   ETS+ N      TA  N+ L+D S+ +    E  D KS V  K+A ++ +N
Sbjct: 401 YQSSETSYQNAPSGGSTARRNMKLQDTSQKLSEGFESLDVKS-VKPKTATASSAN 454


>AE014298-1652|AAF48069.1|  901|Drosophila melanogaster CG1703-PA
           protein.
          Length = 901

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 244 KNVTATPNISLEDVSEDVGVDSERADTKSLVSRKSAVSTKSNVSKLKEKE 293
           KN+ A  +   ++V++D+  DSE  + K  +S K+A  +K    K  EKE
Sbjct: 184 KNMFAMSDDEEDEVADDLPNDSEE-EEKEQLSNKAAKESKKEQQKQPEKE 232


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.316    0.131    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,116,989
Number of Sequences: 52641
Number of extensions: 333836
Number of successful extensions: 937
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 937
Number of HSP's gapped (non-prelim): 5
length of query: 293
length of database: 24,830,863
effective HSP length: 84
effective length of query: 209
effective length of database: 20,409,019
effective search space: 4265484971
effective search space used: 4265484971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)