Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000735-TA|BGIBMGA000735-PA|undefined
         (293 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.4  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 256 DVSE-DVGVDSERADTKSLVSRKSAVSTKSNVSKLKEKE 293
           D+SE +   D E ADT+ L       S K     L  +E
Sbjct: 313 DLSESETSSDEEEADTRPLKKEPITQSNKRTAGNLATRE 351


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/28 (25%), Positives = 15/28 (53%)

Query: 163 EDIAELLYNSYKMFELNIMEKERIAAEI 190
           +D+ +  Y  YKM+EL  +    +  ++
Sbjct: 399 KDLQDKYYEEYKMYELGELASSFVGPKV 426


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.131    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,581
Number of Sequences: 429
Number of extensions: 2028
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 293
length of database: 140,377
effective HSP length: 57
effective length of query: 236
effective length of database: 115,924
effective search space: 27358064
effective search space used: 27358064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)