GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000735-TA|BGIBMGA000735-PA|undefined
         (293 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    28   1.4  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    27   4.2  
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.3  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   7.3  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   7.3  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    26   7.3  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   7.3  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    26   7.3  

>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 238 ETSFSNKNVTATPNISLEDVSEDVGVDSE-RADTKSLVSRKSAVSTKSNVSKL 289
           +T+F++ + +ATP I+   +S  V   S   +   S +S  S  S+ S +S +
Sbjct: 776 QTAFTSSSSSATPTITQSSISTSVSSQSSMNSSYSSPISSNSVTSSTSIISSI 828


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 244 KNVTATPNISLEDVSEDVGVDSERADTKSLVSRKSAVSTKSNVSKLKEK 292
           K +T+T N+  ED +ED+G       T++ +++K     K+  S+  EK
Sbjct: 287 KALTSTNNVEEEDPAEDIGKIIASGQTRAYLAQKE--REKNGESEKDEK 333


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 243 NKNVTATPNISLEDVSEDVGVDSERADTKSLVSRKSAVSTKSNVSKLKEK 292
           + +V+ TP +  ED  ED+   S  + T S     S  + +  + K+ EK
Sbjct: 6   HNSVSETPEVKQEDNDEDLDAYSWSSSTDSAGEIPSLPTNRKILEKIAEK 55


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 236 PRETSFSNKNVTATPNISLEDVSEDVGVDSERA-DTKSLVSRKSAVSTKSNV 286
           P+++ F   +  A+P  S+ +    +G +S+RA DT  + SR    +  +N+
Sbjct: 222 PQQSKFHECSQFASPRSSIVNGPRTLGKNSKRADDTARMASRMKPSNFNNNI 273


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 129 YQNVDAATLKFDTAYVELQKVVEQAMEIPVIEIREDI 165
           + N++A  L  +T    LQ V E A+E   ++I EDI
Sbjct: 285 FWNLEAQKLTENTTQKVLQLVAEDALEAWKLDILEDI 321


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 226 SIQDRFGIYLPRETSFSNKNVTATPNISLEDVSEDVG 262
           S  D FG ++   +SFSN++     +++ ED   D G
Sbjct: 464 STSDNFGKHIILTSSFSNQSADKGSSLAAEDDRNDEG 500


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 26  FTRTVDELECEIKEFLGLPVDASDIKDYELKSD 58
           FTR  DE E E  ++   P DA++   Y L+ D
Sbjct: 99  FTRPSDEYESEYSDYNAQPSDANNF--YNLRGD 129


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 51  KDYELKSDLQNIIREHY 67
           +D EL SD+ N++R HY
Sbjct: 111 EDLELDSDMPNLLRAHY 127


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,031,646
Number of Sequences: 5004
Number of extensions: 35829
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 8
length of query: 293
length of database: 2,362,478
effective HSP length: 72
effective length of query: 221
effective length of database: 2,002,190
effective search space: 442483990
effective search space used: 442483990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)