GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000735-TA|BGIBMGA000735-PA|undefined
         (293 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600...    29   3.4  

>03_05_1124 + 30559633-30559674,30559781-30559890,30559973-30560030,
            30560455-30560718,30560803-30560940,30561264-30561315,
            30561525-30561604,30561929-30561988,30562084-30562164,
            30562299-30562376,30563548-30563676,30563896-30564039,
            30564145-30564290,30564402-30564558,30564657-30564715,
            30564800-30564959,30565054-30565203,30565309-30565445,
            30565531-30565677,30565995-30566052,30566417-30566518,
            30566590-30566627,30566846-30566972,30567053-30567223,
            30567313-30567444,30567575-30567681,30567815-30567875,
            30567970-30568147,30568245-30568450,30568781-30568879,
            30569021-30569236,30569333-30569472,30569559-30569660,
            30569747-30569861,30570129-30570194,30570323-30570480,
            30570594-30570690,30570931-30571137,30571435-30571505,
            30571648-30571747,30571836-30571892,30571969-30572025,
            30572108-30572188,30572319-30572401,30572504-30572651
          Length = 1722

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 9    MVQQSKKKDILKEAAQYFTRTVDELECEIKEFLGLPVDASDIKDYELKSDLQNIIRE 65
            ++Q++++   LKEA     + V+EL   +     L +D  + K  E+ S+L+++++E
Sbjct: 1122 IIQEARETGALKEAKDKLEKRVEELTWRLDVEKHLRIDLEEAKGQEI-SNLKSVLQE 1177


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.131    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,774,632
Number of Sequences: 37544
Number of extensions: 182657
Number of successful extensions: 485
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 485
Number of HSP's gapped (non-prelim): 1
length of query: 293
length of database: 14,793,348
effective HSP length: 81
effective length of query: 212
effective length of database: 11,752,284
effective search space: 2491484208
effective search space used: 2491484208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)