GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000735-TA|BGIBMGA000735-PA|undefined
         (293 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032637-4|CAA21619.2|  534|Caenorhabditis elegans Hypothetical ...    32   0.42 
AC087232-1|AAK09079.2|  574|Caenorhabditis elegans Hypothetical ...    31   1.3  
U41625-1|AAA83325.2|  586|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>AL032637-4|CAA21619.2|  534|Caenorhabditis elegans Hypothetical
           protein Y43F8C.4 protein.
          Length = 534

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 118 NTILGTVDKAVYQNVDAATLKFDTAYVELQKVVEQAMEIPVIEIREDIAELLYNSYKMFE 177
           +TI   +DK +  +V A+T K  +    L  + E+ ++I   ++ ED+A L     K+ E
Sbjct: 256 DTISTNIDK-IAADVVASTNKVSSEQSALFHLQEELLKIRETKLSEDVAALKLEQLKVHE 314

Query: 178 LNIMEKERI 186
           LN+  K+ +
Sbjct: 315 LNLSLKDLV 323


>AC087232-1|AAK09079.2|  574|Caenorhabditis elegans Hypothetical
           protein Y92H12BR.7 protein.
          Length = 574

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 212 GMPNNVACSKCLLISIQDRFGIYLPRETSFSNKNVTATPNISLEDVSEDVG-VDSERADT 270
           G+PNN  C+ C L  I  +     P   + S KNV +T    L    E  G VDSE ADT
Sbjct: 443 GLPNNKQCTMCNLYPIGKKKLPVAPVVEAASVKNVDSTMTTILR---EGCGHVDSEVADT 499


>U41625-1|AAA83325.2|  586|Caenorhabditis elegans Hypothetical
           protein K03A1.2 protein.
          Length = 586

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 253 SLEDVSEDVGVDSERADTKSLVSRKSAVSTKSNVSKLKEKE 293
           SL++V ED G+D +  D    V  K     KS+V + K K+
Sbjct: 58  SLDEVEEDAGIDDDEQDDDEDV--KEVPKKKSHVKQKKSKK 96


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.131    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,443,807
Number of Sequences: 27539
Number of extensions: 186053
Number of successful extensions: 589
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 3
length of query: 293
length of database: 12,573,161
effective HSP length: 81
effective length of query: 212
effective length of database: 10,342,502
effective search space: 2192610424
effective search space used: 2192610424
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)