GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000735-TA|BGIBMGA000735-PA|undefined
         (293 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso...    30   2.1  
At3g02930.1 68416.m00288 expressed protein  ; expression support...    30   2.1  
At1g66840.1 68414.m07597 expressed protein contains Pfam profile...    30   2.1  
At1g22260.1 68414.m02782 expressed protein                             29   3.7  
At1g42580.1 68414.m04910 hypothetical protein contains similarit...    28   6.5  
At1g22882.1 68414.m02857 expressed protein                             28   6.5  

>At4g37820.1 68417.m05351 expressed protein Kaposi's
           sarcoma-associated herpes-like virus ORF73gene, Kaposi's
           sarcoma-associated herpesvirus, U52064
          Length = 532

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/54 (33%), Positives = 23/54 (42%)

Query: 238 ETSFSNKNVTATPNISLEDVSEDVGVDSERADTKSLVSRKSAVSTKSNVSKLKE 291
           ET+ S  N T T   S  D S   G  +    TK+    K  V +    SK+KE
Sbjct: 261 ETNLSTSNATETTESSGSDESGSSGKSTGYQQTKNEEDEKEKVQSSEEESKVKE 314


>At3g02930.1 68416.m00288 expressed protein  ; expression supported
           by MPSS
          Length = 806

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 8   KMVQQSKKKDILKEAAQYFTRTVDELECEIKEFLGLPVDASDIKDYELKSDLQNIIREH 66
           K  +++ +K  L EA +   ++++  E E  E +   ++A   K+ ELK +L+N+  +H
Sbjct: 122 KEAEEASEK--LDEALEAQKKSLENFEIEKFEVVEAGIEAVQRKEEELKKELENVKNQH 178


>At1g66840.1 68414.m07597 expressed protein contains Pfam profile
           PF05701: Plant protein of unknown function (DUF827);
           expression supported by MPSS
          Length = 607

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 133 DAATLKFDTAYVELQKVVEQAMEIPVIEIREDIAELLYNSYKMFELNIMEKERIAAEIA 191
           + + LK D  YV  +KVV +  E+  +E R +    L  S K+ E+++  +E +  E+A
Sbjct: 120 ELSKLKLDVVYVSREKVVAE-KEVMELESRMEENLKLLESLKL-EVDVANEEHVLVEVA 176


>At1g22260.1 68414.m02782 expressed protein
          Length = 857

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 252 ISLEDVSEDVGVDSERADTKSLVSRKSAVSTKSNVSKLKEK 292
           + LE   +++   +ER  T SL+ +K AV TK   S  + K
Sbjct: 184 LKLEKQQKEMFYQTERCGTASLIEKKDAVITKLEASAAERK 224


>At1g42580.1 68414.m04910 hypothetical protein contains similarity
           to hypothetical proteins
          Length = 134

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 256 DVSEDVGVDSERADTKSLVSRKSAVSTKSNV 286
           ++S  +GV + +A  K +VS+ + V  K NV
Sbjct: 56  EISRPIGVKASKAKAKKVVSKTTTVEDKGNV 86


>At1g22882.1 68414.m02857 expressed protein
          Length = 660

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 224 LISIQDRFGIYLPRETSFSNKNVTATPNISLEDVSEDVGVD--SERADTKSLVSRKSAVS 281
           LIS+QD    Y PRE    +K     P   +E +  D G D  + R   K          
Sbjct: 410 LISVQDNKNAYKPREGDSEHKE---KPMQQIESLEGDDGADKSTHREKEKEAPPENMLAK 466

Query: 282 TKSNVSKLKEK 292
           T+++++K   K
Sbjct: 467 TEASMAKSSNK 477


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.131    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,104,618
Number of Sequences: 28952
Number of extensions: 171505
Number of successful extensions: 516
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 512
Number of HSP's gapped (non-prelim): 6
length of query: 293
length of database: 12,070,560
effective HSP length: 80
effective length of query: 213
effective length of database: 9,754,400
effective search space: 2077687200
effective search space used: 2077687200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)