Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000734-TA|BGIBMGA000734-PA|undefined
         (113 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   1.7  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   1.7  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    20   6.9  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    19   9.1  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    19   9.1  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          19   9.1  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
          protein.
          Length = 237

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 16/53 (30%), Positives = 22/53 (41%)

Query: 15 DNIVGLIKNEKNSTFSKEEESRVITENNETKKIVDFGELTSKFKGDSSKHVLR 67
          DN V  +K   N       + + +TEN +    VD G+ T      SS H  R
Sbjct: 45 DNNVAELKTCGNGLAFDASDPKFLTENCDYIHNVDCGDRTQLEPPISSPHCER 97


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
          protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 16/53 (30%), Positives = 22/53 (41%)

Query: 15 DNIVGLIKNEKNSTFSKEEESRVITENNETKKIVDFGELTSKFKGDSSKHVLR 67
          DN V  +K   N       + + +TEN +    VD G+ T      SS H  R
Sbjct: 45 DNNVAELKTCGNGLAFDASDPKFLTENCDYIHNVDCGDRTQLEPPISSPHCER 97


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 1   MDEFFKKLKNTVTYDNIVGLIKNEKNST 28
           ++   +  K     D +V L+ NE N+T
Sbjct: 183 LERIIEAEKRVECNDPLVALVVNENNTT 210


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 19.4 bits (38), Expect = 9.1
 Identities = 7/30 (23%), Positives = 15/30 (50%)

Query: 1   MDEFFKKLKNTVTYDNIVGLIKNEKNSTFS 30
           +  FF KLK+ +  ++++     E    F+
Sbjct: 161 ISSFFSKLKHKIVGESVIDEKAEEHKEQFT 190


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 19.4 bits (38), Expect = 9.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 29  FSKEEESRVITENNETKKIVDFGELTSKFKGDSSK 63
           F KEE+++V+T      +     + TS     S K
Sbjct: 140 FKKEEKNKVVTPKTSPNEASMSPQSTSSNNSASPK 174


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 19.4 bits (38), Expect = 9.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 29  FSKEEESRVITENNETKKIVDFGELTSKFKGDSSK 63
           F KEE+++V+T      +     + TS     S K
Sbjct: 160 FKKEEKNKVVTPKTSPNEASMSPQSTSSNNSASPK 194


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.307    0.127    0.333 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,174
Number of Sequences: 317
Number of extensions: 877
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 113
length of database: 114,650
effective HSP length: 49
effective length of query: 64
effective length of database: 99,117
effective search space:  6343488
effective search space used:  6343488
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (19.8 bits)
S2: 38 (19.4 bits)