Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000734-TA|BGIBMGA000734-PA|undefined
         (113 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   0.66 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   1.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   8.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    20   8.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 0.66
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 27  STFSKEEESRVITENNETKKIVDFGELTSK-FKGDSSKHVLRNLKSQSSKSVNKAKGGVL 85
           +T  K E   ++  +  +KK++  GEL S     D     L ++ +  +K V K    ++
Sbjct: 891 ATSVKAEPGSIMAMSESSKKVLSPGELLSSCVSNDGGCSSLVDVSTPVNKKVYKQNDYIV 950

Query: 86  LKSSDQN 92
            +SS  +
Sbjct: 951 DESSSSS 957


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 72  QSSKSVNKAKGGVLLKSSDQNMNLTDDD 99
           QS +  N  +   LL  SD+N N+ ++D
Sbjct: 363 QSGRVNNTQRNEYLLALSDRNQNVLNND 390


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 63  KHVLRNLKSQSSKSVNKAKGGVLLKSSD 90
           KH  R  + Q    +   +G + +KSS+
Sbjct: 389 KHPNRRARGQLRTKIESGEGTIPVKSSE 416


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 57  FKGDSSKHVLRNLKSQSSKSVNKAKGGV 84
           F+  S+ HV+ N      +++NK   GV
Sbjct: 273 FENRSNLHVIVNATVTKVRTLNKRATGV 300


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.307    0.127    0.333 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,505
Number of Sequences: 429
Number of extensions: 1199
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 113
length of database: 140,377
effective HSP length: 50
effective length of query: 63
effective length of database: 118,927
effective search space:  7492401
effective search space used:  7492401
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.3 bits)
S2: 39 (19.8 bits)