Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000733-TA|BGIBMGA000733-PA|IPR001173|Glycosyl
transferase, family 2, IPR000772|Ricin B lectin, IPR008997|Ricin
B-related lectin
         (589 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    30   0.062
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   3.1  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   9.3  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
          protein MRJP2 protein.
          Length = 452

 Score = 29.9 bits (64), Expect = 0.062
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 35 ALEGKDLLSDQPRDVEETLSKTM-WKYQDYKRQSEYRRKVMLK 76
          A +G  +  + PR++E++L+    WKY DY   SE RR+  ++
Sbjct: 14 ACQGAIVRENSPRNLEKSLNVIHEWKYFDYDFGSEERRQAAIQ 56



 Score = 22.6 bits (46), Expect = 9.3
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)

Query: 428 GHVFRKRRPYGVGE----KQDYMLQNSMRMARVWMDDY 461
           G   ++  P+ VG     K +YML  S RM ++  DD+
Sbjct: 354 GMKIKEELPHFVGSNKPVKDEYMLVLSNRMQKIVNDDF 391


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 94  DLEEQFGLIRNSEDLRIRDKGYNLHAFNTLISQRIGD 130
           D++  FG I++ EDL    K  NL     L+     D
Sbjct: 89  DVDPIFGTIKDLEDLTAEAKKQNLKVILDLVPNHTSD 125


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 514 GRTLCLDASNNVAPILGKCHEMGGTQEWKHKGT 546
           GR  C        PI G C ++  T ++  KGT
Sbjct: 63  GRVSCPVLRAYTCPICGACGDIAHTVKYCPKGT 95


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,251
Number of Sequences: 429
Number of extensions: 8268
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 4
length of query: 589
length of database: 140,377
effective HSP length: 61
effective length of query: 528
effective length of database: 114,208
effective search space: 60301824
effective search space used: 60301824
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)