GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000733-TA|BGIBMGA000733-PA|IPR001173|Glycosyl
transferase, family 2, IPR000772|Ricin B lectin, IPR008997|Ricin
B-related lectin
         (589 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   4.5  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    23   7.8  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 39  KDLLSDQPRDVEETLSKTMWKYQDYKRQSEYRRKVMLKEKFAKQQAIKMSKKTENDLEEQ 98
           +D    +  D +ETL K      D    +  R  V+ K  F K  +    +KT  +   +
Sbjct: 270 RDAFLKEVADFQETLKKISQFQLDAHEFACLRAIVLFKTSFEKPSSSSNQEKTTTE-SAK 328

Query: 99  FGLIRNSEDLRI 110
             +I++   +R+
Sbjct: 329 ISVIQDDAQMRL 340


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 316 YSARAVTPVIDVINADTFEYSPS 338
           Y   A++ V+DVIN  T+++  S
Sbjct: 184 YDVPAMSNVLDVINVMTYDFHGS 206


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,268
Number of Sequences: 317
Number of extensions: 6113
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 2
length of query: 589
length of database: 114,650
effective HSP length: 61
effective length of query: 528
effective length of database: 95,313
effective search space: 50325264
effective search space used: 50325264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)