Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000733-TA|BGIBMGA000733-PA|IPR001173|Glycosyl
transferase, family 2, IPR000772|Ricin B lectin, IPR008997|Ricin
B-related lectin
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302... 33 0.48
05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300... 33 0.84
01_06_1757 - 39678181-39678325,39678472-39678626,39678731-396788... 31 1.9
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235... 31 1.9
07_03_1605 - 28093235-28094031,28094887-28094974 30 4.5
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 30 4.5
11_06_0730 - 26728241-26729335,26729998-26730660 30 5.9
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 30 5.9
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 29 7.8
03_01_0318 - 2495617-2497788 29 7.8
>02_04_0080 -
19529575-19529643,19529756-19529938,19530061-19530210,
19530297-19530379,19530497-19530599,19530709-19530918,
19531023-19531183,19531275-19531351,19531483-19531610,
19531695-19531935,19532047-19532180,19532261-19532435,
19532587-19532656,19532746-19532803,19532887-19532994,
19533088-19533283,19533381-19533727,19534008-19534034,
19534334-19534336
Length = 840
Score = 33.5 bits (73), Expect = 0.48
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 41 LLSDQPRD--VEETLSKTMWKYQDYKRQSEYRRKVMLKEKFAKQQAIKMSKKTENDLEEQ 98
+L++Q R V ET S+T+ Q+ + + ++K KE+ QQA +KKT D EE
Sbjct: 1 MLANQVRQLMVHETRSRTLAASQEEGKAAPKKQKTESKEQEGGQQAPSKNKKTA-DNEEH 59
Query: 99 FGLIRNSEDLRIRDKGYNLHAFNTLISQ------RIGDHRDLPDTRNKLCQSQQ 146
G S++ +++ + +L+ T + + I +H + D R L ++Q
Sbjct: 60 DGEQEPSKNKKLKAEESDLNGKATAVKEFSEFCKAIREHLTIEDMRKILQGNEQ 113
>05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,
3003571-3004442,3004592-3004773,3005206-3005295,
3005388-3005675,3005776-3005997,3006053-3006133,
3006634-3006861
Length = 1475
Score = 32.7 bits (71), Expect = 0.84
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 41 LLSDQPRDVEETLSKTMWKYQDYKRQSEYRRKVMLKEKFAKQQAIKMSKKTEN-DLEEQF 99
L+ + R+ E TL+ M ++ R+ + ++ + K Q K ++ TE+ DLE+
Sbjct: 1198 LVEEHNREKEATLNSNMRLHEQLDRKQKLELEIAHLK--GKLQVTKHTQGTEDSDLEKTI 1255
Query: 100 GLIRNSEDLRIRDKGYNLHAFNTLISQRIGDHRDLPDTRNKLCQSQQ 146
+ N + +I D Y + TLI + +L + R + S Q
Sbjct: 1256 EALTNELEEKIEDMNYMDNMNQTLILKEKRSKDELQEARKLVIDSLQ 1302
>01_06_1757 -
39678181-39678325,39678472-39678626,39678731-39678898,
39679532-39679723,39679821-39680000,39680099-39680266
Length = 335
Score = 31.5 bits (68), Expect = 1.9
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 40 DLLSDQPRDVEETLSKTMWKYQDYKRQSEYRRKVMLKEKFAKQQAIKMSKKTENDLEEQF 99
D +D+P +++ET ++ Y RQ E + K +E F + K K+TE + ++
Sbjct: 228 DDAADRPEELKETAGDESREFTRYMRQRELQEK-QEEELFTRAPLTKRDKQTEKWMRKEL 286
Query: 100 GLIRNSED 107
+R D
Sbjct: 287 HGLRGLTD 294
>01_06_0836 -
32321431-32321556,32321656-32321872,32321975-32323590,
32323670-32323753,32323834-32324104,32324294-32324547,
32324709-32324918,32325839-32326024
Length = 987
Score = 31.5 bits (68), Expect = 1.9
Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 21 DIKDRIKNNDKSIAALEGKDLLSDQPRDVEETLSKTMWKYQDYKRQSEYRRKVMLKEKFA 80
+++ + K+N ++++ E K+ +S ++ LSK + QD KR + +R +L A
Sbjct: 563 NLRVQFKSNSETLSR-EHKEFMSKMQQEHASWLSKIQQERQDLKRDIDIQRVELLNSAKA 621
Query: 81 KQQAI-KMSKKTENDLEEQ 98
+Q I ++ E + E++
Sbjct: 622 RQMEIDSYLREREEEFEQK 640
>07_03_1605 - 28093235-28094031,28094887-28094974
Length = 294
Score = 30.3 bits (65), Expect = 4.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 174 SIMDRTDQKHIKEIILVDDYSDLYNLHHDVQEAVDKLNN 212
S R + + K +LVD DLY H + E +D L N
Sbjct: 48 SFAQRAEMYYKKRPVLVDMLGDLYRTHRSLAEQLDLLKN 86
>05_05_0348 +
24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 30.3 bits (65), Expect = 4.5
Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 105 SEDLRIRDKGYNLHAFNTLISQRIGDHRDLPDTRNKLCQSQQYFDELPRASIIICFYNEH 164
SE +I+ L ++ ++ DL + K C+ Q F E R + Y E
Sbjct: 349 SEREKIQHSSQTLKEMESVYNKHAKRQEDL-ENNMKSCKDQ--FKEFERKDVK---YRED 402
Query: 165 YETLMRSVHSIMDRTDQKHIKEIILVDDYSDLYNLHHDVQEAVDKLNNVIKKEEEMIE 222
+ L + + + D+T++ K + + +L ++E + KL +EE+++E
Sbjct: 403 LKHLKQKIKKLEDKTEKDTSKIDESTKEVEESSSLIPQLEEEIPKLQEKFNEEEKVLE 460
>11_06_0730 - 26728241-26729335,26729998-26730660
Length = 585
Score = 29.9 bits (64), Expect = 5.9
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 458 MDDYVKKVIEVNPSAAHVEIGDISERKA-LRERLQCKTFKWYLDNMWFETDRSELVL 513
++D + ++E + H EI D +A L E L+ K F LD++W + E +L
Sbjct: 362 LEDIFRDMLEEITQSRHSEISDCRGLEAKLVENLRGKRFLLVLDDLWVNDENHEKLL 418
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 29.9 bits (64), Expect = 5.9
Identities = 43/238 (18%), Positives = 104/238 (43%), Gaps = 20/238 (8%)
Query: 37 EGKDLLSDQPRDVEETLSKTMWKYQDYKRQSEYRRKVM--LKEKFAKQQAIKMSKKTEND 94
E + L+++ ++E+ ++ + + K Q + R ++ LK++ + +A K+ K EN
Sbjct: 842 ESRSLITNLKDELEQVEAQKV----ELKLQMDESRSLITNLKDELEQVEAQKVELK-ENQ 896
Query: 95 LEEQFGLIRNSEDLR-IRDKGYNLHAFNTLISQRIGDHRDLP-DTRNKLCQSQQYFD--- 149
LE L ED +R L A + + + L D + + + Y
Sbjct: 897 LESHRRLSEVQEDSEALRRSNAKLQATVDHVVEECKSLQTLTADLKKQKLEVHGYASHLE 956
Query: 150 -ELPRASIIICFYNEHYETLMRSVHSIMDRTDQKHIKEIILVDDYSDLYNLHHDVQEAVD 208
EL ++ + + E+L + S+ + +KE L+ + +++ H + +E +D
Sbjct: 957 QELEQSKRKTMDFCKTLESLEAKLSSLQEDIS---LKEQSLLSELENIFQEHKEHEERID 1013
Query: 209 KLNNVIKK--EEEMIETNNIDMEXXXXXXXXXXXXKKSTENSEVKNNVFNIRLLKTSK 264
+++ ++ K +E+ +E +N++ E ++ S + + + +L+ K
Sbjct: 1014 RVHLLLNKIEKEKTVELSNLEREVISLTAQLSSTEEE--RESSTLDTIREVSILRADK 1069
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 29.5 bits (63), Expect = 7.8
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 53 LSKTM-WKYQDYKRQSEYRRKVMLKEKF-AKQQAIKMSKKTENDLEEQFG 100
LSK + W Y D R+ E +RK K + ++Q K+ K E EE+ G
Sbjct: 146 LSKEVGWNYYDTIRELEEKRKEKAKVAYDRRKQLAKLRVKAEKAAEEKLG 195
>03_01_0318 - 2495617-2497788
Length = 723
Score = 29.5 bits (63), Expect = 7.8
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 5/33 (15%)
Query: 526 APILGKCHEMGGTQEWKHKGTASSPIYNTAAGM 558
A ILG+ HE+ EW+H+ T SP+ ++AAG+
Sbjct: 108 ARILGRSHEL----EWQHEATWRSPV-SSAAGL 135
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,268,649
Number of Sequences: 37544
Number of extensions: 755723
Number of successful extensions: 1641
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1637
Number of HSP's gapped (non-prelim): 13
length of query: 589
length of database: 14,793,348
effective HSP length: 86
effective length of query: 503
effective length of database: 11,564,564
effective search space: 5816975692
effective search space used: 5816975692
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
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