Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000732-TA|BGIBMGA000732-PA|IPR006317|Ubiquinol-
cytochrome c reductase, iron-sulfur subunit, IPR004192|Ubiquinol
cytochrome reductase transmembrane region, IPR005806|Rieske [2Fe-2S]
region, IPR005805|Rieske iron-sulfur protein
         (210 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...   162   3e-41
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   4.7  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    26   4.7  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   8.2  

>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score =  162 bits (394), Expect = 3e-41
 Identities = 75/168 (44%), Positives = 101/168 (60%), Gaps = 3/168 (1%)

Query: 42  GDEKSGVTYT-IGFFGLLCGSYAVKSELVHFISYMXXXXXXXXXXSIEVDLTKITPGACV 100
           GD    ++Y  +G  G L  + A ++ +  F++              EVDL+KI  G  +
Sbjct: 62  GDRSRVISYAMVGTMGALTAAGA-QATVHDFLASWSASADVLAMSKAEVDLSKIPEGKNL 120

Query: 101 SYKWRGKPLFIKRRTQADIDIEAKTPLSVLRDPETPEQRTTIPEWLIVIGICTHLGCVPI 160
             KW+GKP+FI+ RT  +I       +S LRDP+    R   PEWL++IG+CTHLGCVPI
Sbjct: 121 VVKWQGKPVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMIGVCTHLGCVPI 180

Query: 161 ANAGDYPGGFYCPCHGSHYDNVGRARKGPAPLNLEVPPYKFVSDSLVI 208
             AGDY GG++CPCHGSHYD  GR R+GPAPLNL +P Y F    ++I
Sbjct: 181 GEAGDY-GGWFCPCHGSHYDISGRIRRGPAPLNLAIPAYTFEGSKIII 227


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 175 HGSHYDNVGRARKGPAPLNLE 195
           HG HYD+     KG  PL  E
Sbjct: 617 HGGHYDHYAATAKGKNPLAAE 637


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
          Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 43 DEKSGVTYTIGFFGLLCGSYAVKSELVHF 71
          DE+ G+   +  F   CG   +K  LVHF
Sbjct: 33 DEEGGIDLCLTCFQSGCGETGLKHSLVHF 61


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 172 CPCHGSHYDNVGRARKGP 189
           C C G  + NVG  R GP
Sbjct: 396 CVCKGEDHPNVGTGRGGP 413


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.142    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,018,309
Number of Sequences: 5004
Number of extensions: 41118
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 4
length of query: 210
length of database: 2,362,478
effective HSP length: 70
effective length of query: 140
effective length of database: 2,012,198
effective search space: 281707720
effective search space used: 281707720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)