GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000732-TA|BGIBMGA000732-PA|IPR006317|Ubiquinol-
cytochrome c reductase, iron-sulfur subunit, IPR004192|Ubiquinol
cytochrome reductase transmembrane region, IPR005806|Rieske [2Fe-2S]
region, IPR005805|Rieske iron-sulfur protein
         (210 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0023 - 19000591-19001234,19003322-19003496                      186   1e-47
04_03_0792 + 19693957-19694146,19695614-19696260                      180   6e-46
07_03_0865 + 22130880-22130921,22131938-22132170,22132268-221323...    60   1e-09
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646...    31   0.52 
10_08_0971 - 21949721-21949936,21950051-21950484,21950599-219507...    31   0.90 

>02_04_0023 - 19000591-19001234,19003322-19003496
          Length = 272

 Score =  186 bits (453), Expect = 1e-47
 Identities = 84/188 (44%), Positives = 117/188 (62%), Gaps = 2/188 (1%)

Query: 24  NPYRKDQYKDVRKTRWGAGD-EKSGVTYTIGFFGLLCGSYAVKSELVHFISYMXXXXXXX 82
           NP  K  Y +    R+  GD  K    Y +   G    +  ++  ++ F+  M       
Sbjct: 86  NPSAKIVYDEYNHERYQPGDPSKRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVL 145

Query: 83  XXXSIEVDLTKITPGACVSYKWRGKPLFIKRRTQADIDIEAKTPLSVLRDPETPEQRTTI 142
              S+EVDL+ I PG  V+ KWRGKP+FI+RRT+ DI++     +  LRDP+   +R   
Sbjct: 146 ALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDINLANSVDIGSLRDPQQDAERVKN 205

Query: 143 PEWLIVIGICTHLGCVPIANAGDYPGGFYCPCHGSHYDNVGRARKGPAPLNLEVPPYKFV 202
           PEWL+VIG+CTHLGC+P+ NAGD+ GG++CPCHGSHYD  GR RKGPAP NLEVP Y F+
Sbjct: 206 PEWLVVIGVCTHLGCIPLPNAGDF-GGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFL 264

Query: 203 SDSLVIVG 210
            ++ +++G
Sbjct: 265 EENKLLIG 272


>04_03_0792 + 19693957-19694146,19695614-19696260
          Length = 278

 Score =  180 bits (439), Expect = 6e-46
 Identities = 83/188 (44%), Positives = 114/188 (60%), Gaps = 2/188 (1%)

Query: 24  NPYRKDQYKDVRKTRWGAGD-EKSGVTYTIGFFGLLCGSYAVKSELVHFISYMXXXXXXX 82
           NP  K  Y +    R   GD  K    Y +   G    +  ++  ++ F+  M       
Sbjct: 92  NPNPKVVYDEYNHERHAPGDPSKRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVL 151

Query: 83  XXXSIEVDLTKITPGACVSYKWRGKPLFIKRRTQADIDIEAKTPLSVLRDPETPEQRTTI 142
              S+EVDL+ I PG  V+ KWRGKP+FI+RRT+ DI +     +  LR P+   +R   
Sbjct: 152 ALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIALANSVDVGSLRHPQQDAERVKN 211

Query: 143 PEWLIVIGICTHLGCVPIANAGDYPGGFYCPCHGSHYDNVGRARKGPAPLNLEVPPYKFV 202
           PEWL+VIG+CTHLGC+P+ NAGD+ GG++CPCHGSHYD  GR RKGPAP NLEVP Y F+
Sbjct: 212 PEWLVVIGVCTHLGCIPLPNAGDF-GGWFCPCHGSHYDISGRIRKGPAPFNLEVPTYSFL 270

Query: 203 SDSLVIVG 210
            ++ +++G
Sbjct: 271 EENKLLIG 278


>07_03_0865 +
           22130880-22130921,22131938-22132170,22132268-22132385,
           22132474-22132656,22132859-22132960
          Length = 225

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 26/44 (59%), Positives = 31/44 (70%), Gaps = 2/44 (4%)

Query: 151 ICTHLGCVPIANAGDYPGGFYCPCHGSHYDNVGRARKGPAPLNL 194
           +CTHLGCV   NA +    F CPCHGS Y+N GR  +GPAPL+L
Sbjct: 153 VCTHLGCVVPWNAAE--NKFICPCHGSQYNNQGRVVRGPAPLSL 194


>10_08_0973 -
           21963754-21963936,21964089-21964383,21964504-21964616,
           21964729-21964913,21965054-21965201,21965297-21965575,
           21965657-21965761,21965936-21966178,21966426-21966486,
           21966734-21966792
          Length = 556

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 148 VIGICTHLGCVPIANAGDYPGGFYCPCHGSHYDNVGRARKGPAPLNLEV 196
           V+  C H  C P+       G   CP HG  Y   G+  K P+   L V
Sbjct: 272 VMNTCAHRAC-PLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTKMLNV 319


>10_08_0971 -
           21949721-21949936,21950051-21950484,21950599-21950791,
           21950909-21951007,21951114-21951191,21951275-21951669,
           21954317-21954482,21954840-21954927,21955015-21955127,
           21955242-21955426,21955840-21955987,21956071-21956349,
           21956425-21956529,21956892-21957137,21957367-21957408,
           21957539-21957613
          Length = 953

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 152 CTHLGCVPIANAGDYPGGFYCPCHGSHYDNVGRARKGPAPLNLEV 196
           C H  C P+       G   CP HG  Y   G+  K PA   L V
Sbjct: 276 CAHRAC-PLHLGSVSEGRIQCPFHGWEYSTDGKCEKMPATKLLNV 319


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.142    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,784,801
Number of Sequences: 37544
Number of extensions: 283561
Number of successful extensions: 457
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 5
length of query: 210
length of database: 14,793,348
effective HSP length: 79
effective length of query: 131
effective length of database: 11,827,372
effective search space: 1549385732
effective search space used: 1549385732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)