GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000732-TA|BGIBMGA000732-PA|IPR006317|Ubiquinol-
cytochrome c reductase, iron-sulfur subunit, IPR004192|Ubiquinol
cytochrome reductase transmembrane region, IPR005806|Rieske [2Fe-2S]
region, IPR005805|Rieske iron-sulfur protein
         (210 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26175| Best HMM Match : No HMM Matches (HMM E-Value=.)             159   2e-39
SB_49651| Best HMM Match : EGF_CA (HMM E-Value=1.6e-18)                30   1.6  
SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)                 29   2.8  
SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)                       29   2.8  
SB_35849| Best HMM Match : Fibrinogen_C (HMM E-Value=0.15)             29   3.7  
SB_31958| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_46028| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_59117| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.7e-05)         27   8.6  

>SB_26175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score =  159 bits (386), Expect = 2e-39
 Identities = 68/119 (57%), Positives = 87/119 (73%), Gaps = 1/119 (0%)

Query: 92  TKITPGACVSYKWRGKPLFIKRRTQADIDIEAKTPLSVLRDPETPEQRTTIPEWLIVIGI 151
           T IT G  + +KWRGKPLF++ RT  +I  E    ++ LR PE    R    +WL++IG+
Sbjct: 108 TFITSGKNMVFKWRGKPLFVRHRTADEISEEQNVDVASLRHPEADADRVKDDKWLVLIGV 167

Query: 152 CTHLGCVPIANAGDYPGGFYCPCHGSHYDNVGRARKGPAPLNLEVPPYKFVSDSLVIVG 210
           CTHLGCVPI+NAG+Y GG+YCPCHGSHYD  GR RKGPAPLNLEVP + F+ +S ++VG
Sbjct: 168 CTHLGCVPISNAGEY-GGYYCPCHGSHYDASGRIRKGPAPLNLEVPEHSFLDESTLVVG 225



 Score = 34.7 bits (76), Expect = 0.057
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 21 PNFNPYRKDQYKDVRKTRWGAGDEKSGVTYTIGFFGLLCGSYAVKSELVHFISYMXXXXX 80
          P+F  YR+    +V KT       ++     +   G+  G +A K+ LV+F+S M     
Sbjct: 2  PDFGDYRRPSTSEVGKTETTEIGRRAFTYLVVAGMGVT-GVHAGKNLLVNFLSTMSASAD 60

Query: 81 XXXXXSIEVDLTKI 94
                IEVDL  I
Sbjct: 61 VLAMAKIEVDLNTI 74


>SB_49651| Best HMM Match : EGF_CA (HMM E-Value=1.6e-18)
          Length = 342

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 157 CVPIANAGDYPGGFYCPCHGSHYDNVGRARKGPAPLNLEVPPYKFVSDS 205
           C   AN  +  G FYC CH      VG +  G   + LE PP ++ S+S
Sbjct: 209 CHSYANCTNTMGSFYCTCH------VGYSGDGVTCVVLERPPPRWSSNS 251


>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
          Length = 1514

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 157  CVPIANAGDYPGGFYCPCHGSHY 179
            CVP+AN G   G + C C   +Y
Sbjct: 1089 CVPVANQGFQRGSYECKCKPGYY 1111


>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1705

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 157  CVPIANAGDYPGGFYCPCHGSHYDN 181
            C P AN  +  G FYC CH  +  N
Sbjct: 1495 CHPDANCTNTKGSFYCTCHVGYSGN 1519



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 157  CVPIANAGDYPGGFYCPCH 175
            C P AN  +  G FYC CH
Sbjct: 984  CHPDANCTNTKGSFYCTCH 1002


>SB_35849| Best HMM Match : Fibrinogen_C (HMM E-Value=0.15)
          Length = 631

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/47 (36%), Positives = 21/47 (44%)

Query: 160 IANAGDYPGGFYCPCHGSHYDNVGRARKGPAPLNLEVPPYKFVSDSL 206
           +A A  Y  G    C+G+ Y NVG      AP+  E  P K   D L
Sbjct: 67  VAGALRYKDGNLQVCNGNEYVNVGGNAGQEAPVGTETNPGKSCRDIL 113


>SB_31958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 96  PGACVSYKWRGKPLFIKRRTQA 117
           P  C+ Y+W G PLFI   ++A
Sbjct: 197 PQQCLRYQWDGTPLFINPESEA 218


>SB_46028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/47 (36%), Positives = 21/47 (44%)

Query: 160 IANAGDYPGGFYCPCHGSHYDNVGRARKGPAPLNLEVPPYKFVSDSL 206
           +A A  Y  G    C+G+ Y NVG      AP+  E  P K   D L
Sbjct: 47  VAGALRYKDGNLQVCNGNEYVNVGGNAGREAPVGTETNPGKSCRDIL 93


>SB_59117| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.7e-05)
          Length = 357

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 128 SVLRDPETPEQRTTIPEWLIVIGICTHLGCVPIA 161
           S +RDP  P +R  + ++LIV   C  +  +  A
Sbjct: 206 SFVRDPVVPSRRAAVDQFLIVSFACVFVALIEFA 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.142    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,746,384
Number of Sequences: 59808
Number of extensions: 317474
Number of successful extensions: 578
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 35
length of query: 210
length of database: 16,821,457
effective HSP length: 79
effective length of query: 131
effective length of database: 12,096,625
effective search space: 1584657875
effective search space used: 1584657875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)